Searching for up to 100 curated homologs for Synpcc7942_2236 FitnessBrowser__SynE:Synpcc7942_2236 (554 a.a.)
Found high-coverage hits (≥70%) to 25 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
Q8ZQM4 ABC-type glutathione transporter (EC 7.4.2.10) from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
46% identity, 98% coverage of query (447 bits)
GsiA / b0829 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
gsiA / P75796 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli (strain K12) (see 3 papers)
GSIA_ECOLI / P75796 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 from Escherichia coli (strain K12) (see paper)
P75796 ABC-type glutathione transporter (EC 7.4.2.10) from Escherichia coli (see paper)
TC 3.A.1.5.11 / P75796 Hypothetical ABC transporter ATP-binding protein yliA, component of Glutathione porter, YliABCD or GsiABCD from Escherichia coli (see 4 papers)
45% identity, 99% coverage of query (442 bits)
TC 3.A.1.5.23 / Q9F9T4 EppD, component of The Ethylene diamine tetraacetate (EDTA) uptake porter, EppABCD (see 2 papers)
43% identity, 99% coverage of query (419 bits)
SM_b21644 ABC transporter for D-Raffinose, ATPase component from Sinorhizobium meliloti 1021
42% identity, 99% coverage of query (410 bits)
YejF / b2180 putative oligopeptide ABC transporter ATP binding subunit YejF (EC 7.4.2.6) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
YejF / P33916 putative oligopeptide ABC transporter ATP binding subunit YejF (EC 7.4.2.6) from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.5.21 / P33916 YejF, component of The Microcin C/peptide uptake porter, YejABEF from Escherichia coli (strain K12) (see 3 papers)
yejF / RF|NP_416685 uncharacterized ABC transporter ATP-binding protein yejF from Escherichia coli K12 (see paper)
43% identity, 99% coverage of query (392 bits)
TC 3.A.1.5.24 / Q8ZNJ8 YejF, component of The antimicrobial peptide (protamine, melittin, polymyxin B, human defensin (HBD)-1 and HBD-2 exporter, YejABEF (Eswarappa et al., 2008). Prefers N-formyl methionine peptides, such as Microcin C (of prokaryotic origin) to non formylated peptides (of eukaryotic origin) from Salmonella typhimurium (see paper)
43% identity, 99% coverage of query (390 bits)
TC 3.A.1.5.8 / Q97UG5 MalK, component of Maltose and maltooligosaccharide porter from Sulfolobus solfataricus (see paper)
32% identity, 99% coverage of query (322 bits)
TC 3.A.1.5.17 / Q92NE8 PrbD, component of The proline betaine uptake porter from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
36% identity, 94% coverage of query (322 bits)
Build an alignment for Synpcc7942_2236 and 8 homologs with ≥ 30% identity
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RbsA / b3749 ribose ABC transporter ATP binding subunit from Escherichia coli K-12 substr. MG1655 (see 5 papers)
RbsA / P04983 ribose ABC transporter ATP binding subunit from Escherichia coli (strain K12) (see 2 papers)
RBSA_ECOLI / P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.1 / P04983 RbsA aka B3749, component of Ribose porter from Escherichia coli (see 6 papers)
rbsA / GB|AAC76772.1 ribose transport, ATP-binding protein RbsA; EC 3.6.3.17 from Escherichia coli K12 (see 7 papers)
25% identity, 96% coverage of query (125 bits)
1yqtA Rnase-l inhibitor
25% identity, 89% coverage of query (114 bits)
5yv5A Crystal structure of the complex of archaeal ribosomal stalk protein ap1 and archaeal ribosome recycling factor aabce1.
25% identity, 89% coverage of query (114 bits)
3bk7A / Q9UZA4 Structure of the complete abce1/rnaase-l inhibitor protein from pyrococcus abysii (see paper)
24% identity, 89% coverage of query (108 bits)
3ozxA Crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
23% identity, 88% coverage of query (103 bits)
YjjK / b4391 energy-dependent translational throttle protein EttA from Escherichia coli K-12 substr. MG1655 (see 9 papers)
ETTA_ECOLI / P0A9W3 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Escherichia coli (strain K12) (see 2 papers)
CH_004211 ABC transporter, ATP-binding protein YjiK from Escherichia coli K12 (see paper)
23% identity, 95% coverage of query (94.7 bits)
3j5sD / P0A9W3 Etta binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics (see paper)
23% identity, 95% coverage of query (94.4 bits)
ETTA_ECOL6 / A0A0H2VFI8 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
23% identity, 95% coverage of query (94.0 bits)
ETTA_MYCTU / P9WQK3 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
24% identity, 93% coverage of query (84.7 bits)
P63389 Probable ATP-binding protein YheS from Escherichia coli (strain K12)
23% identity, 93% coverage of query (84.0 bits)
YHES_ECOL6 / A0A0H2VBH0 Probable ATP-binding protein YheS from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
23% identity, 93% coverage of query (83.6 bits)
RLI1_YEAST / Q03195 Translation initiation factor RLI1; ATP-binding cassette sub-family E member RLI1; RNase L inhibitor from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 6 papers)
4crmP / Q03195 Cryo-em of a pre-recycling complex with erf1 and abce1 (see paper)
23% identity, 88% coverage of query (83.2 bits)
3j16B Models of ribosome-bound dom34p and rli1p and their ribosomal binding partners
23% identity, 88% coverage of query (83.2 bits)
8cask / Q03195 Cryo-em structure of native otu2-bound ubiquitinated 48s initiation complex (partial) (see paper)
23% identity, 88% coverage of query (83.2 bits)
5ll6h Structure of the 40s abce1 post-splitting complex in ribosome recycling and translation initiation
23% identity, 88% coverage of query (82.4 bits)
7mscx 70SIC in complex with MtbEttA at Pre_R0 state
24% identity, 93% coverage of query (82.4 bits)
8buu9 / W1SM44 8buu9 (see paper)
22% identity, 99% coverage of query (79.3 bits)
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Lawrence Berkeley National Laboratory