Searching for up to 100 curated homologs for WP_004118879.1 NCBI__GCF_000359745.1:WP_004118879.1 (320 a.a.)
Found high-coverage hits (≥70%) to 53 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
2vk2A / P39325 Crystal structure of a galactofuranose binding protein (see paper)
69% identity, 92% coverage of query (417 bits)
YtfQ / b4227 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
YtfQ / P39325 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli (strain K12) (see 3 papers)
YTFQ_ECOLI / P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see paper)
P39325 ABC-type D-galactofuranose transporter (EC 7.5.2.9) from Escherichia coli (see paper)
69% identity, 92% coverage of query (417 bits)
Shewana3_2073 L-arabinose ABC transporter, substrate-binding component AraU from Shewanella sp. ANA-3
61% identity, 95% coverage of query (368 bits)
5ocpA / A0KWY4 The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
65% identity, 87% coverage of query (365 bits)
6hbdA / A0QT50 Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-galactofuranose (see paper)
52% identity, 78% coverage of query (252 bits)
6hyhA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-fucofuranose
52% identity, 78% coverage of query (252 bits)
6hbmA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with alpha-l-arabinofuranose
52% identity, 78% coverage of query (252 bits)
7e7mC / Q8E283 Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
37% identity, 87% coverage of query (147 bits)
2ioyA / Q8RD41 Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
37% identity, 80% coverage of query (141 bits)
1dbpA / P02925 Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
34% identity, 77% coverage of query (129 bits)
RBSB_BACSU / P36949 Ribose import binding protein RbsB from Bacillus subtilis (strain 168) (see 2 papers)
33% identity, 89% coverage of query (128 bits)
RbsB / b3751 ribose ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 25 papers)
RbsB / P02925 ribose ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 25 papers)
RBSB_ECOLI / P02925 Ribose import binding protein RbsB from Escherichia coli (strain K12) (see 5 papers)
TC 3.A.1.2.1 / P02925 RbsB aka RBSP aka PRLB aka B3751, component of Ribose porter from Escherichia coli (see 11 papers)
rbsB / GB|AAC76774.1 D-ribose-binding periplasmic protein; EC 3.6.3.17 from Escherichia coli K12 (see 11 papers)
32% identity, 92% coverage of query (127 bits)
TC 3.A.1.2.13 / A6VKT0 RbsB, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
32% identity, 76% coverage of query (113 bits)
4zjpA / A6VKT0 Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
32% identity, 76% coverage of query (113 bits)
FRUE_BIFLO / Q8G848 Fructose import binding protein FruE from Bifidobacterium longum (strain NCC 2705) (see paper)
30% identity, 89% coverage of query (110 bits)
Build an alignment for WP_004118879.1 and 15 homologs with ≥ 30% identity
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4yo7A / Q9KAG4 Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
29% identity, 78% coverage of query (107 bits)
PS417_11885 Inositol transport system sugar-binding protein from Pseudomonas simiae WCS417
31% identity, 81% coverage of query (105 bits)
TC 3.A.1.2.19 / Q9X053 Periplasmic binding protein/LacI transcriptional regulator, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
29% identity, 87% coverage of query (101 bits)
2fn8A / Q9X053 Thermotoga maritima ribose binding protein ribose bound form (see paper)
29% identity, 83% coverage of query (101 bits)
2x7xA / Q8A6X1 Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
30% identity, 70% coverage of query (99.0 bits)
4irxA / A0A0H3C834 Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
29% identity, 80% coverage of query (92.0 bits)
TC 3.A.1.2.21 / B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA, component of The myoinositol (high affinity)/ D-ribose (low affinity) transporter IatP/IatA/IbpA. The structure of IbpA with myoinositol bound has been solved from Caulobacter crescentus (strain NA1000 / CB15N)
30% identity, 78% coverage of query (91.7 bits)
XYPA_MYCS2 / A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
31% identity, 75% coverage of query (89.0 bits)
4rs3A / A0QYB3 Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
31% identity, 75% coverage of query (89.0 bits)
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
31% identity, 75% coverage of query (89.0 bits)
APIBP_RHIEC / Q2JZQ5 D-apiose import binding protein; D-apiose binding SBP from Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42) (see paper)
28% identity, 84% coverage of query (88.2 bits)
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
30% identity, 79% coverage of query (87.8 bits)
5ibqA / Q2JZQ5 Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
28% identity, 84% coverage of query (87.8 bits)
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
28% identity, 84% coverage of query (87.8 bits)
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
31% identity, 78% coverage of query (87.0 bits)
4rsmA / A0QYB5 Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
30% identity, 70% coverage of query (84.0 bits)
APIBP_PARG4 / B1G898 D-apiose import binding protein; D-apiose binding SBP from Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M) (see paper)
29% identity, 83% coverage of query (84.0 bits)
THPA_MYCS2 / A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
30% identity, 70% coverage of query (83.6 bits)
APIBP_RHIR8 / B9JK76 D-apiose import binding protein; D-apiose binding SBP from Rhizobium rhizogenes (strain K84 / ATCC BAA-868) (Agrobacterium radiobacter) (see paper)
29% identity, 84% coverage of query (82.8 bits)
5dteB / A6VKG5 Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
29% identity, 70% coverage of query (80.5 bits)
APIBP_ACTSZ / A6VKQ8 D-apiose import binding protein; D-apiose binding SBP from Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) (see paper)
27% identity, 90% coverage of query (77.0 bits)
TC 3.A.1.2.16 / Q1M4Q9 Periplasmic erythritol binding protein, component of The erythritol uptake permease, EryEFG (Yost et al., 2006) (probably orthologous to 3.A.1.2.11) from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
29% identity, 70% coverage of query (77.0 bits)
8fxuA / D9TSJ1 Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
28% identity, 72% coverage of query (73.6 bits)
2h3hA / Q9WXW9 Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
30% identity, 74% coverage of query (71.6 bits)
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
30% identity, 74% coverage of query (68.9 bits)
FRCB_RHIML / Q9F9B2 Fructose import binding protein FrcB from Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
TC 3.A.1.2.7 / Q9F9B2 FrcB, component of Fructose/mannose/ribose porter from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
28% identity, 76% coverage of query (65.9 bits)
6gt9A / W8QN64 Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
24% identity, 84% coverage of query (63.9 bits)
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
24% identity, 84% coverage of query (63.9 bits)
4wutA / B9K0B2 Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
27% identity, 81% coverage of query (63.5 bits)
YphF / b2548 putative ABC transporter periplasmic binding protein YphF from Escherichia coli K-12 substr. MG1655 (see 4 papers)
23% identity, 95% coverage of query (60.5 bits)
GalR / VIMSS3562401 GalR regulator of Galactosides utilization, effector Galactose (repressor) from Fervidobacterium nodosum Rt17-B1
26% identity, 78% coverage of query (60.1 bits)
PGA1_262p00430 glucose transporter, periplasmic substrate-binding component from Phaeobacter inhibens DSM 17395
27% identity, 72% coverage of query (57.0 bits)
RbsR / VIMSS547489 RbsR regulator of Ribose utilization, effector Ribose (repressor) from Photorhabdus luminescens TTO1
24% identity, 70% coverage of query (54.3 bits)
MglB / b2150 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 43 papers)
MglB / P0AEE5 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 42 papers)
MGLB_ECOLI / P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.3 / P0AEE5 D-galactose-binding periplasmic protein DGAL aka MglB aka B2150, component of Galactose/glucose (methyl galactoside) porter from Escherichia coli (see 10 papers)
23% identity, 86% coverage of query (52.0 bits)
5xssA / A6LW07 Xylfii molecule (see paper)
25% identity, 71% coverage of query (49.3 bits)
4wwhA / A0QT42 Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
26% identity, 74% coverage of query (48.1 bits)
5hqjA / B1G1H7 Crystal structure of abc transporter solute binding protein b1g1h7 from burkholderia graminis c4d1m, target efi-511179, in complex with d-arabinose
23% identity, 80% coverage of query (48.1 bits)
4wt7A / B9K0E0 Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5165, target efi-511223) with bound allitol
25% identity, 72% coverage of query (45.1 bits)
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Lawrence Berkeley National Laboratory