Sites on a Tree

 

Searching for up to 100 curated homologs for WP_008201258.1 NCBI__GCF_000166275.1:WP_008201258.1 (1125 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q8F222 methylmalonyl-CoA mutase (EC 5.4.99.2) from Leptospira interrogans serovar lai str. 56601 (see paper)
    68% identity, 100% coverage of query (1574 bits)

ICMF_GEOKA / Q5KUG0 Fused isobutyryl-CoA mutase; EC 5.4.99.13; EC 3.6.5.- from Geobacillus kaustophilus (strain HTA426) (see 2 papers)
    61% identity, 99% coverage of query (1367 bits)

ICMF_CUPMC / Q1LRY0 Fused isobutyryl-CoA mutase; EC 5.4.99.13; EC 3.6.5.- from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) (Ralstonia metallidurans) (see 3 papers)
Q1LRY0 isobutyryl-CoA mutase (EC 5.4.99.13) from Cupriavidus metallidurans (see 3 papers)
    59% identity, 99% coverage of query (1308 bits)

8sslA / Q1LRY0 Isobutyryl-coa mutase fused q341a in the presence of gtp (see paper)
    59% identity, 99% coverage of query (1305 bits)

4xc6A Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, and mg (holo-icmf/gdp)
    58% identity, 99% coverage of query (1290 bits)

5cjwA Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, mg (holo-icmf/gdp), and substrate pivalyl-coenzyme a
    58% identity, 99% coverage of query (1283 bits)

5cjvA Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, mg (holo-icmf/gdp), and substrate isovaleryl-coenzyme a
    58% identity, 99% coverage of query (1281 bits)

5cjtA Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, mg (holo-icmf/gdp), and substrate isobutyryl-coenzyme a
    58% identity, 99% coverage of query (1279 bits)

Q8Y2U5 methylmalonyl-CoA mutase (EC 5.4.99.2) from Ralstonia solanacearum (see paper)
    57% identity, 100% coverage of query (1268 bits)

4xc7A Isobutyryl-coa mutase fused with bound butyryl-coa and without cobalamin or gdp (apo-icmf)
    58% identity, 99% coverage of query (1268 bits)

ICMF_NOCFA / Q5Z110 Fused isobutyryl-CoA mutase; EC 5.4.99.13; EC 3.6.5.- from Nocardia farcinica (strain IFM 10152) (see paper)
    54% identity, 99% coverage of query (1159 bits)

Build an alignment

Build an alignment for WP_008201258.1 and 11 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory