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Searching for up to 100 curated homologs for WP_008498367.1 NCBI__GCF_000342445.1:WP_008498367.1 (336 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

HP15_2661 Citrate uptake transporter, substrate-binding component TctC from Marinobacter adhaerens HP15
    36% identity, 89% coverage of query (170 bits)

Dshi_3123 Tricarboxylate transport protein TctC from Dinoroseobacter shibae DFL-12
    35% identity, 88% coverage of query (169 bits)

TC 2.A.80.1.4 / S5XTE7 Citrate uptake transporter, substrate binding protein, component of Pmf-dependent citrate uptake porter, TctABC from Corynebacterium glutamicum MB001
    33% identity, 90% coverage of query (165 bits)

TC 2.A.80.1.1 / Q9FA46 TctC aka STM2786, component of The tricarboxylate transporter, TctABC from Salmonella enterica (see paper)
    33% identity, 100% coverage of query (164 bits)

Build an alignment

Build an alignment for WP_008498367.1 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

8hkbA / A0A0K8P8D2 Tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d (see paper)
    24% identity, 79% coverage of query (59.3 bits)

2dvzA / Q7W0A0 Structure of a periplasmic transporter (see paper)
    24% identity, 80% coverage of query (52.0 bits)

2f5xB / Q7VTS1 Structure of periplasmic binding protein bugd (see paper)
    23% identity, 85% coverage of query (51.2 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory