Sites on a Tree

 

Searching for up to 100 curated homologs for WP_011383270.1 NCBI__GCF_000009985.1:WP_011383270.1 (296 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.7.3.58 / Q31PG5 Possible transporter of polar amino acids including glutamate, glutamine and aspartate, DmeA. It complements a sepJ mutation in Anabaena (TC# 2.A.7.23.2), and SepJ complements a dmeA mutation. Alternatively, and less likely, it could be an activator of an ABC transporter catalyzing uptake of these amino acids from Synechococcus elongatus (strain PCC 7942)
    31% identity, 87% coverage of query (102 bits)

Build an alignment

Build an alignment for WP_011383270.1 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

EamA / b1533 cysteine/O-acetylserine exporter EamA from Escherichia coli K-12 substr. MG1655 (see 8 papers)
eamA / P31125 cysteine/O-acetylserine exporter EamA from Escherichia coli (strain K12) (see 9 papers)
EAMA_ECOLI / P31125 Probable amino-acid metabolite efflux pump from Escherichia coli (strain K12) (see paper)
TC 2.A.7.3.2 / P31125 YdeD (EamA) efflux pump for O-acetylserine, cysteine, asparagine and glutamine from Escherichia coli (strain K12) (see 6 papers)
eamA / RF|NP_416050.4 O-acetylserine/cysteine export protein EamA from Escherichia coli K12 (see 8 papers)
    26% identity, 80% coverage of query (51.6 bits)

SAMHT_CHLT2 / B0B8F4 S-adenosylmethionine/S-adenosylhomocysteine transporter; SAM/SAH transporter; SAMHT from Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (see paper)
TC 2.A.7.3.20 / B0B8F4 S-adenosylmethionine/S-adenosylhomocysteine transporter (SAM/SAH transporter) (SAMHT; CTL843).  May function in SAM uptake and SAH export, perhaps by an SAM/SAH antiport mechanism from Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (see 2 papers)
    26% identity, 84% coverage of query (48.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory