Sites on a Tree

 

Searching for up to 100 curated homologs for WP_011778117.1 NCBI__GCF_000015305.1:WP_011778117.1 (456 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

hemA / CAD48144.1 glutamyl-tRNA-reductase from Bacillus megaterium (see paper)
    32% identity, 93% coverage of query (243 bits)

B7J8J0 glutamyl-tRNA reductase (EC 1.2.1.70) from Acidithiobacillus ferrooxidans (see paper)
    35% identity, 93% coverage of query (204 bits)

hemA / AAA27289.1 transfer RNA-Gln reductase from Synechocystis sp (see paper)
    32% identity, 93% coverage of query (203 bits)

gtr1 / AAD16897.1 glutamyl-tRNA reductase precursor from Glycine max (see paper)
    32% identity, 95% coverage of query (188 bits)

GtrA / b1210 glutamyl-tRNA reductase (EC 1.2.1.70) from Escherichia coli K-12 substr. MG1655 (see 11 papers)
hemA / P0A6X1 glutamyl-tRNA reductase (EC 1.2.1.70) from Escherichia coli (strain K12) (see 8 papers)
HEM1_ECOLI / P0A6X1 Glutamyl-tRNA reductase; GluTR; EC 1.2.1.70 from Escherichia coli (strain K12) (see 3 papers)
P0A6X1 glutamyl-tRNA reductase (EC 1.2.1.70) from Escherichia coli (see paper)
hemA / MB|P0A6X1 glutamyl-tRNA reductase; EC 1.2.1.70 from Escherichia coli K12 (see 12 papers)
    33% identity, 90% coverage of query (187 bits)

Build an alignment

Build an alignment for WP_011778117.1 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

HEM1_CHLP8 / P28462 Glutamyl-tRNA reductase; GluTR; EC 1.2.1.70 from Chlorobaculum parvum (strain DSM 263 / NCIMB 8327) (Chlorobium vibrioforme subsp. thiosulfatophilum) (see paper)
P28462 glutamyl-tRNA reductase (EC 1.2.1.70) from Prosthecochloris vibrioformis (see paper)
    28% identity, 93% coverage of query (185 bits)

HEMA2 / P49294 glutamyl-tRNA reductase (EC 1.2.1.70) from Arabidopsis thaliana (see 2 papers)
HEM12_ARATH / P49294 Glutamyl-tRNA reductase 2, chloroplastic; GluTR; EC 1.2.1.70 from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
    30% identity, 93% coverage of query (183 bits)

HEMA1 / P42804 glutamyl-tRNA reductase (EC 1.2.1.70) from Arabidopsis thaliana (see 3 papers)
HEM11_ARATH / P42804 Glutamyl-tRNA reductase 1, chloroplastic; GluTR; EC 1.2.1.70 from Arabidopsis thaliana (Mouse-ear cress) (see 9 papers)
P42804 glutamyl-tRNA reductase (EC 1.2.1.70) from Arabidopsis thaliana (see 3 papers)
    30% identity, 95% coverage of query (180 bits)

5yjlB / P42804 Crystal structure of arabidopsis glutamyl-tRNA reductase in complex with NADPH and gbp (see paper)
    30% identity, 93% coverage of query (177 bits)

HEM11_HORVU / Q42843 Glutamyl-tRNA reductase 1, chloroplastic; GluTR; EC 1.2.1.70 from Hordeum vulgare (Barley) (see paper)
    29% identity, 93% coverage of query (173 bits)

HEM1_METTM / P42809 Glutamyl-tRNA reductase; GluTR; EC 1.2.1.70 from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum) (see paper)
    28% identity, 93% coverage of query (132 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory