Sites on a Tree

 

Searching for up to 100 curated homologs for WP_011840779.1 NCBI__GCF_000015985.1:WP_011840779.1 (495 a.a.)

Found high-coverage hits (≥70%) to 46 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q5YFS2 amidase (EC 3.5.1.4) from Achromobacter xylosoxidans (see paper)
    41% identity, 95% coverage of query (297 bits)

nylA / P13398 6-aminohexanoate cyclic dimer hydrolase monomer (EC 3.5.2.12) from Paenarthrobacter ureafaciens (see 4 papers)
NYLA_PAEUR / P13398 6-aminohexanoate-cyclic-dimer hydrolase; Nylon oligomers-degrading enzyme EI; EC 3.5.2.12 from Paenarthrobacter ureafaciens (see paper)
    38% identity, 96% coverage of query (233 bits)

B7XBZ7 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Cupriavidus sp. T7 (see 2 papers)
B7XBZ8 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Acidovorax sp. T31 (see 2 papers)
    38% identity, 96% coverage of query (232 bits)

B5MF68 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Rhodococcus sp. U-224 (see paper)
    38% identity, 96% coverage of query (232 bits)

B7XBZ9 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Cupriavidus sp. U124 (see 2 papers)
    38% identity, 96% coverage of query (232 bits)

3a2qA / P13398 Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate (see paper)
    38% identity, 96% coverage of query (232 bits)

B7XC00 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Sphingomonas sp. U238 (see 2 papers)
    38% identity, 96% coverage of query (228 bits)

tpdC / M1X895 (Z)-N,N'-(but-2-ene-2,3-diyl)diacetamide hydrolase from Rhodococcus sp. TMP1 (see paper)
tpdC / CCN27361.1 amidase from Rhodococcus sp. TMP1 (see paper)
    36% identity, 96% coverage of query (226 bits)

libA / G3K3F8 linuron hydrolase from Variovorax sp. SRS16 (see 2 papers)
    36% identity, 96% coverage of query (224 bits)

AAM_RHOER / K9NBS6 Acylamidase; EC 3.5.1.13; EC 3.5.1.14; EC 3.5.1.4 from Rhodococcus erythropolis (Arthrobacter picolinophilus) (see paper)
    34% identity, 95% coverage of query (178 bits)

C3UWD1 aryl-acylamidase (EC 3.5.1.13) from bacterium CSBL00001 (see 2 papers)
    32% identity, 94% coverage of query (150 bits)

4yjiA / C3UWD1 The crystal structure of a bacterial aryl acylamidase belonging to the amidase signature (as) enzymes family (see paper)
    32% identity, 94% coverage of query (149 bits)

lpa / Q5XVM9 lipoamidase (EC 3.5.1.138) from Enterococcus faecalis (see 2 papers)
    30% identity, 95% coverage of query (129 bits)

3kfuE / Q9LCX3 Crystal structure of the transamidosome (see paper)
    32% identity, 92% coverage of query (120 bits)

Build an alignment

Build an alignment for WP_011840779.1 and 14 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

gatA / O06491 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
GATA_BACSU / O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis (strain 168) (see 2 papers)
    27% identity, 94% coverage of query (114 bits)

gatA / Q9RTA9 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7; EC 6.3.5.6) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see paper)
    29% identity, 91% coverage of query (114 bits)

cahA / BAC15598.1 carbaryl hydrolase from Arthrobacter sp. RC100 (see paper)
    31% identity, 91% coverage of query (112 bits)

Q9X0Z9 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Thermotoga maritima (see paper)
    27% identity, 95% coverage of query (107 bits)

P95896 amidase (EC 3.5.1.4); nitrilase (EC 3.5.5.1) from Saccharolobus solfataricus (see 3 papers)
    26% identity, 83% coverage of query (106 bits)

FAAH_ARATH / Q7XJJ7 Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana (Mouse-ear cress) (see 10 papers)
Q7XJJ7 fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana (see paper)
    27% identity, 87% coverage of query (106 bits)

6diiH / Q7XJJ7 Structure of arabidopsis fatty acid amide hydrolase in complex with methyl linolenyl fluorophosphonate (see paper)
    27% identity, 87% coverage of query (106 bits)

8ey9B Structure of arabidopsis fatty acid amide hydrolase mutant s305a in complex with 9-hydroxy-10,12-octadecadienoyl-ethanolamide
    27% identity, 87% coverage of query (104 bits)

8ey1D Structure of arabidopsis fatty acid amide hydrolase mutant s305a in complex with n-(3-oxododecanoyl)-l-homoserine lactone
    27% identity, 87% coverage of query (104 bits)

CNBH_COMTE / Q38M35 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni (Pseudomonas testosteroni) (see paper)
    28% identity, 92% coverage of query (103 bits)

P63488 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Staphylococcus aureus (see paper)
2dqnA / P63488 Structure of tRNA-dependent amidotransferase gatcab complexed with asn (see paper)
    27% identity, 91% coverage of query (101 bits)

2f2aA Structure of tRNA-dependent amidotransferase gatcab complexed with gln
    27% identity, 91% coverage of query (101 bits)

FAAH2 / Q6GMR7 fatty-acid amide hydrolase 2 (EC 3.5.1.99; EC 3.5.1.60) from Homo sapiens (see 2 papers)
FAAH2_HUMAN / Q6GMR7 Fatty-acid amide hydrolase 2; Amidase domain-containing protein; Anandamide amidohydrolase 2; Oleamide hydrolase 2; EC 3.5.1.99 from Homo sapiens (Human) (see 2 papers)
B2C6G4 fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens (see paper)
Q6GMR7 amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens (see 2 papers)
    23% identity, 92% coverage of query (98.2 bits)

3h0lA / O66610 Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
    25% identity, 92% coverage of query (95.9 bits)

3h0mA Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus
    25% identity, 92% coverage of query (95.9 bits)

P22984 amidase (EC 3.5.1.4) from Rhodococcus erythropolis (see 2 papers)
Q7DKE4 amidase (EC 3.5.1.4) from Rhodococcus sp. N-771 (see paper)
amdA / AAA62721.1 enantiomer-selective amidase from Brevibacterium sp (see paper)
CAA38009.1 amidase from Rhodococcus sp (see paper)
    28% identity, 78% coverage of query (95.1 bits)

FAAH_MEDTR / G7ISB0 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
    27% identity, 88% coverage of query (95.1 bits)

F6N111 aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp. M1-1 (see paper)
G9FKH7 amidase (EC 3.5.1.4) from Paracoccus sp. (see paper)
    28% identity, 94% coverage of query (94.4 bits)

3a1iA / Q7DKE4 Crystal structure of rhodococcus sp. N-771 amidase complexed with benzamide (see paper)
    28% identity, 78% coverage of query (94.0 bits)

B1GY01 nitrilase (EC 3.5.5.1) from Rhodococcus erythropolis (see paper)
    28% identity, 78% coverage of query (93.2 bits)

GATA_ARATH / Q9LI77 Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    27% identity, 89% coverage of query (93.2 bits)

GATA_HUMAN / Q9H0R6 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens (Human) (see 3 papers)
Q9H0R6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Homo sapiens (see paper)
    25% identity, 93% coverage of query (92.4 bits)

amdA / P27765 nicotinamidase (EC 3.5.1.19) from Pseudomonas chlororaphis (see paper)
    28% identity, 84% coverage of query (90.1 bits)

Q9CZN8 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Mus musculus (see paper)
    24% identity, 93% coverage of query (89.4 bits)

AMID_RHORH / P84650 Enantioselective amidase; EC 3.5.1.4 from Rhodococcus rhodochrous
    26% identity, 84% coverage of query (83.6 bits)

tms2 / P0A2X0 indoleacetamide hydrolase (EC 3.5.1.4) from Rhizobium radiobacter (see paper)
    26% identity, 92% coverage of query (81.6 bits)

1o9oA / Q9ZIV5 Crystal structure of the s131a mutant of malonamidase e2 complexed with malonamate from bradyrhizobium japonicum (see paper)
    28% identity, 83% coverage of query (78.2 bits)

1ocmA The crystal structure of malonamidase e2 covalently complexed with pyrophosphate from bradyrhizobium japonicum
    28% identity, 83% coverage of query (77.8 bits)

MANHY_PSEPU / Q84DC4 Mandelamide hydrolase; EC 3.5.1.86 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
    26% identity, 95% coverage of query (67.4 bits)

AMI1 / Q9FR37 indole-3-acetamide amidohydrolase (EC 3.5.1.4) from Arabidopsis thaliana (see 5 papers)
AMI1_ARATH / Q9FR37 Amidase 1; AtAMI1; Translocon at the outer membrane of chloroplasts 64-I; AtTOC64-I; EC 3.5.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
    26% identity, 71% coverage of query (67.0 bits)

4n0iA / Q03557 Crystal structure of s. Cerevisiae mitochondrial gatfab in complex with glutamine (see paper)
    25% identity, 78% coverage of query (64.3 bits)

atzF / Q936X2 allophanate hydrolase subunit from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZF_PSESD / Q936X2 Allophanate hydrolase; EC 3.5.1.54 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X2 allophanate hydrolase (EC 3.5.1.54) from Pseudomonas sp. ADP (see paper)
    25% identity, 85% coverage of query (48.1 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory