Searching for up to 100 curated homologs for WP_012170936.1 NCBI__GCF_000010525.1:WP_012170936.1 (262 a.a.)
Found high-coverage hits (≥70%) to 65 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
PHEC_PSEAE / Q01269 Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
Q01269 arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa (see 3 papers)
58% identity, 89% coverage of query (287 bits)
8pnhA Chorismate mutase
57% identity, 89% coverage of query (271 bits)
8pnjA Chorismate mutase
47% identity, 82% coverage of query (189 bits)
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
38% identity, 89% coverage of query (164 bits)
5kkwA / Q4FLR5 Crystal structure of sar11_1068 bound to a sulfobetaine (3-(1- methylpiperidinium-1-yl)propane-1-sulfonate)
30% identity, 89% coverage of query (119 bits)
Build an alignment for WP_012170936.1 and 5 homologs with ≥ 30% identity
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3k4uE / Q7MAG0 Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
28% identity, 85% coverage of query (98.6 bits)
4zv2A An ancestral arginine-binding protein bound to glutamine
28% identity, 85% coverage of query (89.7 bits)
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
29% identity, 85% coverage of query (89.4 bits)
TcyJ / b1920 cystine ABC transporter periplasmic binding protein (EC 7.4.2.12) from Escherichia coli K-12 substr. MG1655 (see 12 papers)
tcyJ / P0AEM9 cystine ABC transporter periplasmic binding protein (EC 7.4.2.12) from Escherichia coli (strain K12) (see 13 papers)
TCYJ_ECOLI / P0AEM9 L-cystine-binding protein TcyJ; CBP; Protein FliY; Sulfate starvation-induced protein 7; SSI7 from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.3.10 / P0AEM9 Cystine-binding periplasmic protein FLIY aka CysX aka B1920, component of Cystine/cysteine/diaminopimelate transporter, CysXYZ; these proteins are also designated FliY/YecS/YecC from Escherichia coli (see 7 papers)
25% identity, 95% coverage of query (83.2 bits)
4h5fA Crystal structure of an amino acid abc transporter substrate-binding protein from streptococcus pneumoniae canada mdr_19a bound to l- arginine, form 1
27% identity, 86% coverage of query (82.8 bits)
4i62A / A0A0H2ZN67 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
28% identity, 71% coverage of query (82.0 bits)
TC 3.A.1.3.6 / P35120 NocT aka ATU6027 aka AGR_PTI_67, component of Nopaline porter from Agrobacterium tumefaciens (see 3 papers)
25% identity, 97% coverage of query (73.6 bits)
3vvdA / Q72JG5 Crystal structure of ttc0807 complexed with ornithine (see paper)
24% identity, 89% coverage of query (71.6 bits)
3vvfA Crystal structure of ttc0807 complexed with arginine
24% identity, 89% coverage of query (71.6 bits)
3vveA Crystal structure of ttc0807 complexed with lysine
24% identity, 89% coverage of query (71.6 bits)
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec)
24% identity, 89% coverage of query (71.6 bits)
5ovzA / P35120 High resolution structure of the pbp noct in complex with nopaline (see paper)
25% identity, 85% coverage of query (70.1 bits)
5itoA Structure of the periplasmic binding protein m117n-noct from a. Tumefaciens in complex with octopine
25% identity, 85% coverage of query (70.1 bits)
5otcA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with noroctopinic acid.
25% identity, 85% coverage of query (69.7 bits)
5otaA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with octopinic acid
25% identity, 85% coverage of query (69.7 bits)
5ot9A Structure of the periplasmic binding protein (pbp) noct from a.Tumefaciens c58 in complex with histopine.
25% identity, 85% coverage of query (69.7 bits)
4powA Structure of the pbp noct in complex with pyronopaline
25% identity, 85% coverage of query (69.7 bits)
AAC45332.1 high affinity cystine binding protein from Lactobacillus reuteri (see 4 papers)
25% identity, 95% coverage of query (67.8 bits)
5lomB / Q7D447 Crystal structure of the pbp soca from agrobacterium tumefaciens c58 in complex with dfg at 1.5 a resolution (see paper)
24% identity, 85% coverage of query (66.6 bits)
5l9oB Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine
24% identity, 85% coverage of query (66.6 bits)
5l9oA Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine
24% identity, 85% coverage of query (66.6 bits)
AO353_21710 ABC transporter for D-glucosamine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E3
26% identity, 93% coverage of query (65.1 bits)
2pvuA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus
26% identity, 84% coverage of query (64.3 bits)
2q2cA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus
26% identity, 84% coverage of query (64.3 bits)
2q2aA / D0VWX8 Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus (see paper)
26% identity, 84% coverage of query (63.9 bits)
AO356_00480 ABC transporter for D-Glucosamine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
26% identity, 87% coverage of query (62.8 bits)
4ymxA / Q8RCC4 Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
23% identity, 86% coverage of query (60.8 bits)
8gtuA / C6XGT2 Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with clidinium (see paper)
29% identity, 84% coverage of query (60.8 bits)
8gu1A Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with pimozide
29% identity, 84% coverage of query (60.8 bits)
6aalA Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with arginine
29% identity, 84% coverage of query (60.8 bits)
6a80A Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with cystine
29% identity, 84% coverage of query (60.8 bits)
C6XGT2 ABC-type cystine transporter (EC 7.4.2.12) from Candidatus Liberibacter asiaticus (see paper)
27% identity, 93% coverage of query (60.5 bits)
5owfA Structure of a lao-binding protein mutant with glutamine
26% identity, 85% coverage of query (60.5 bits)
Pf6N2E2_2958 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
24% identity, 83% coverage of query (60.1 bits)
TCYA_BACSU / P42199 L-cystine-binding protein TcyA from Bacillus subtilis (strain 168) (see paper)
TC 3.A.1.3.14 / P42199 TcyA (YckK), component of Uptake system for L-cystine from Bacillus subtilis (see 5 papers)
25% identity, 94% coverage of query (60.1 bits)
Ac3H11_2555 ABC transporter for L-Histidine, periplasmic substrate-binding component 1 from Acidovorax sp. GW101-3H11
26% identity, 84% coverage of query (60.1 bits)
Pf6N2E2_2053 ABC transporter for D-Glucosamine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
26% identity, 83% coverage of query (59.7 bits)
ARGT_SALTY / P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 6 papers)
argT / RF|NP_461297.1 lysine/arginine/ornithine ABC transporter, periplasmic lysine/arginine/ornithine-binding protein ArgT from Salmonella enterica subsp. enterica serovar Typhimurium (see 4 papers)
26% identity, 85% coverage of query (58.9 bits)
AO356_05495 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
23% identity, 83% coverage of query (58.9 bits)
1lafE / P02911 Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
26% identity, 85% coverage of query (58.9 bits)
1lstA Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding protein with and without a ligand
26% identity, 85% coverage of query (58.9 bits)
1lahE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein
26% identity, 85% coverage of query (58.9 bits)
1lagE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein
26% identity, 85% coverage of query (58.9 bits)
cjaA / CAJ20048.1 glutamine-binding protein from Campylobacter jejuni (see paper)
24% identity, 89% coverage of query (58.2 bits)
HISJ_SALTY / P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
hisJ / GB|AAV76512.1 histidine ABC transporter, periplasmic histidine-binding protein HisJ from Salmonella enterica subsp. enterica serovar Typhimurium (see 5 papers)
25% identity, 84% coverage of query (57.4 bits)
1hslA / P0AEU0 Refined 1.89 angstroms structure of the histidine-binding protein complexed with histidine and its relationship with many other active transport(slash)chemosensory receptors (see paper)
25% identity, 84% coverage of query (57.0 bits)
1xt8B / Q0P9S0 Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
24% identity, 82% coverage of query (56.6 bits)
HisJ / b2309 histidine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
HISJ_ECOLI / P0AEU0 Histidine-binding periplasmic protein; HBP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.3.29 / P0AEU0 Histidine-binding periplasmic protein, component of Histidine/Arginine/Lysine (basic amino acid) uptake porter, HisJ/ArgT/HisP/HisM/HisQ [R, R, C, M, M, respectively] (Gilson et al. 1982). HisJ binds L-His (preferred), but 1-methyl-L-His and 3-methyl-L-His also bind, while the dipeptide carnosine binds weakly; D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with the exception of symmetric dimethylated-L-Arg. L-Lys and L-Orn show weaker interactions with HisJ and methylated and acetylated Lys variants show poor binding.The carboxylate groups of these amino acids and their variants are essential from Escherichia coli (strain K12)
hisJ / GB|AAC75369.1 histidine ABC transporter, periplasmic histidine-binding protein HisJ from Escherichia coli (see 7 papers)
23% identity, 84% coverage of query (53.1 bits)
5eyfB / Q3XZW5 Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
23% identity, 90% coverage of query (52.4 bits)
4eq9A / Q8DRG2 1.4 angstrom crystal structure of abc transporter glutathione-binding protein gsht from streptococcus pneumoniae strain canada mdr_19a in complex with glutathione
23% identity, 84% coverage of query (52.4 bits)
8eyzA / P0AEQ3 Engineered glutamine binding protein bound to gln and a cobaloxime ligand (see paper)
23% identity, 84% coverage of query (51.6 bits)
2q89A Crystal structure of ehub in complex with hydroxyectoine
25% identity, 87% coverage of query (50.4 bits)
2q88A / Q92WC8 Crystal structure of ehub in complex with ectoine (see paper)
25% identity, 87% coverage of query (50.4 bits)
4f3sA / Q8ZPA3 Crystal structure of periplasmic d-alanine abc transporter from salmonella enterica
22% identity, 72% coverage of query (48.9 bits)
DALS_SALTY / Q8ZPA3 ABC transporter D-alanine-binding periplasmic protein; D-alanine transporter in Salmonella from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
22% identity, 72% coverage of query (48.5 bits)
4kqpA / Q9CES5 Crystal structure of lactococcus lactis glnp substrate binding domain 2 (sbd2) in complex with glutamine at 0.95 a resolution (see paper)
24% identity, 82% coverage of query (45.4 bits)
4g4pA / Q837S0 Crystal structure of glutamine-binding protein from enterococcus faecalis at 1.5 a (see paper)
26% identity, 82% coverage of query (45.1 bits)
6detA / S3MDF0 The crystal structure of tv2483 bound to l-arginine (see paper)
21% identity, 87% coverage of query (44.3 bits)
2vhaA Debp
25% identity, 91% coverage of query (44.3 bits)
2ia4B / A0A0H2UXX1 Crystal structure of novel amino acid binding protein from shigella flexneri
25% identity, 91% coverage of query (44.3 bits)
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Lawrence Berkeley National Laboratory