Searching for up to 100 curated homologs for WP_012471064.1 NCBI__GCF_000020385.1:WP_012471064.1 (439 a.a.)
Found high-coverage hits (≥70%) to 50 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
B8BT13 dimethylsulfonio-2-hydroxybutanoate hydroxylase/decarboxylase from Thalassiosira pseudonana (see 2 papers)
37% identity, 95% coverage of query (246 bits)
lysA / BAC66455.1 Diaminopimelate decarboxylase from Burkholderia multivorans (see paper)
32% identity, 97% coverage of query (186 bits)
LysA / b2838 diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
lysA / P00861 diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli (strain K12) (see 33 papers)
DCDA_ECOLW / E0IWI3 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W) (see paper)
DCDA_ECOLI / P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12) (see 5 papers)
P00861 diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli (see 2 papers)
31% identity, 95% coverage of query (162 bits)
1knwA / P00861 Crystal structure of diaminopimelate decarboxylase
31% identity, 95% coverage of query (162 bits)
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
31% identity, 95% coverage of query (162 bits)
Build an alignment for WP_012471064.1 and 5 homologs with ≥ 30% identity
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Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis KMM 6221, DSM 17526
28% identity, 96% coverage of query (146 bits)
A0A0H3H393 lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca (see paper)
29% identity, 95% coverage of query (140 bits)
N515DRAFT_4002 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica UNC79MFTsu3.2
29% identity, 86% coverage of query (120 bits)
DCDA_THEMA / Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
24% identity, 93% coverage of query (115 bits)
2yxxA / Q9X1K5 Crystal structure analysis of diaminopimelate decarboxylate (lysa)
24% identity, 93% coverage of query (115 bits)
Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis DSMZ 15582
27% identity, 88% coverage of query (115 bits)
5x7mA / P09890 Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
28% identity, 95% coverage of query (109 bits)
DCDA_CORGL / P09890 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
P09890 diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum (see paper)
28% identity, 95% coverage of query (108 bits)
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum
28% identity, 95% coverage of query (108 bits)
P56129 diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori (see paper)
27% identity, 93% coverage of query (107 bits)
4xg1B / A1SR00 Psychromonas ingrahamii diaminopimelate decarboxylase with llp
28% identity, 95% coverage of query (107 bits)
DCDA_HELPX / B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
28% identity, 93% coverage of query (107 bits)
lysA / P23630 diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis (strain 168) (see paper)
27% identity, 95% coverage of query (106 bits)
DCDA_STAAC / Q5HG20 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus (strain COL) (see paper)
28% identity, 99% coverage of query (103 bits)
3c5qA / B4XMC6 Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
28% identity, 93% coverage of query (103 bits)
DCDA_MYCTU / P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
P9WIU7 diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis (see 5 papers)
27% identity, 94% coverage of query (100 bits)
1hkvA / P9WIU7 Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
27% identity, 94% coverage of query (99.8 bits)
btrK / Q2L4H3 L-glutamyl-[BtrI acyl-carrier protein] decarboxylase monomer (EC 4.1.1.95) from Niallia circulans (see paper)
BTRK_NIACI / Q2L4H3 L-glutamyl-[BtrI acyl-carrier protein] decarboxylase; Butirosin biosynthesis protein K; EC 4.1.1.95 from Niallia circulans (Bacillus circulans) (see paper)
24% identity, 97% coverage of query (99.4 bits)
7ru7A / Q2L4H3 Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
25% identity, 97% coverage of query (98.6 bits)
BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron VPI-5482
26% identity, 88% coverage of query (98.2 bits)
Q9KVL7 diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae serotype O1 (see paper)
26% identity, 92% coverage of query (97.1 bits)
4xg1A / A1SR00 Psychromonas ingrahamii diaminopimelate decarboxylase with llp
27% identity, 90% coverage of query (95.1 bits)
1tufA / Q58497 Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
24% identity, 95% coverage of query (88.2 bits)
DCDA_METJA / Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
24% identity, 95% coverage of query (88.2 bits)
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine
24% identity, 95% coverage of query (88.2 bits)
AT5G11880 / Q94A94 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana (see paper)
DCDA2_ARATH / Q94A94 Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q94A94 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana (see paper)
23% identity, 91% coverage of query (76.6 bits)
AT3G14390 / Q949X7 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana (see paper)
DCDA1_ARATH / Q949X7 Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q949X7 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana (see paper)
23% identity, 91% coverage of query (76.3 bits)
6n2aA / Q949X7 Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
22% identity, 91% coverage of query (76.3 bits)
sbnH / Q2G1M6 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase (EC 4.1.1.117) from Staphylococcus aureus (strain NCTC 8325 / PS 47) (see paper)
SBNH_STAA8 / Q2G1M6 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase; Staphyloferrin B biosynthesis protein SbnH; EC 4.1.1.117 from Staphylococcus aureus (strain NCTC 8325 / PS 47) (see 2 papers)
Q2G1M6 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase (EC 4.1.1.117) from Staphylococcus aureus (see paper)
24% identity, 89% coverage of query (73.2 bits)
6kniA Crystal structure of sbnh in complex with the cofactor plp, a plp- dependent decarboxylase in staphyloferrin b biothesynthesis
24% identity, 82% coverage of query (69.7 bits)
6knhC / A0A0H3JPF2 Crystal structure of sbnh in complex with citrate, a plp-dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
25% identity, 88% coverage of query (68.9 bits)
6knkA Crystal structure of sbnh in complex with citryl-diaminoethane
24% identity, 82% coverage of query (63.9 bits)
Q54UF3 ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum (see paper)
24% identity, 86% coverage of query (61.2 bits)
2oo0A / P11926 A structural insight into the inhibition of human and leishmania donovani ornithine decarboxylases by 3-aminooxy-1-aminopropane (see paper)
23% identity, 83% coverage of query (59.3 bits)
W5Q1G7 ornithine decarboxylase (EC 4.1.1.17) from Ovis aries (see paper)
24% identity, 85% coverage of query (57.4 bits)
5gjpA Crystal structure of srldc in complex with plp and cadaverine
23% identity, 90% coverage of query (57.4 bits)
5gjnA Crystal structure of lysine decarboxylase from selenomonas ruminantium in p43212 space group
22% identity, 90% coverage of query (55.8 bits)
ldc / O50657 L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium (see paper)
ldc / BAC57940.1 lysine decarboxylase from Selenomonas ruminantium (see paper)
22% identity, 88% coverage of query (54.7 bits)
5gjoA / O50657 Crystal structure of srldc mutant (a225c/t302c) in complex with plp (see paper)
23% identity, 90% coverage of query (54.7 bits)
AZIN2_XENLA / Q9I8S4 Antizyme inhibitor 2; AzI2; Ornithine decarboxylase 2; ODC 2; xODC2; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Xenopus laevis (African clawed frog) (see paper)
23% identity, 80% coverage of query (54.7 bits)
O50657 Lysine/ornithine decarboxylase; LDC; EC 4.1.1.17; EC 4.1.1.18 from Selenomonas ruminantium
22% identity, 88% coverage of query (54.7 bits)
4zgyA Structure of human ornithine decarboxylase in complex with a c- terminal fragment of antizyme
22% identity, 83% coverage of query (54.7 bits)
DCOR_MOUSE / P00860 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus (Mouse) (see 5 papers)
P00860 ornithine decarboxylase (EC 4.1.1.17) from Mus musculus (see 6 papers)
22% identity, 84% coverage of query (53.9 bits)
ODC1 / P11926 ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens (see 3 papers)
DCOR_HUMAN / P11926 Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens (Human) (see 8 papers)
22% identity, 83% coverage of query (52.0 bits)
ADC / Q96A70 arginine decarboxylase (EC 4.1.1.19) from Homo sapiens (see 2 papers)
AZIN2_HUMAN / Q96A70 Antizyme inhibitor 2; AzI2; Arginine decarboxylase; ADC; ARGDC; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Homo sapiens (Human) (see 7 papers)
Q96A70 arginine decarboxylase (EC 4.1.1.19) from Homo sapiens (see 2 papers)
25% identity, 78% coverage of query (51.2 bits)
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Lawrence Berkeley National Laboratory