Sites on a Tree

 

Searching for up to 100 curated homologs for WP_012966499.1 NCBI__GCF_000025505.1:WP_012966499.1 (394 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

pscS / Q59072 Sep-tRNA:Cys-tRNA synthase monomer (EC 2.5.1.73) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (see 2 papers)
SPSS_METJA / Q59072 O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC 2.5.1.73 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see 2 papers)
Q59072 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanocaldococcus jannaschii (see 6 papers)
    52% identity, 98% coverage of query (375 bits)

5x6bJ / Q59072 Crystal structure of sepcyse-sepcyss in complex with trnacys from methanocaldococcus jannaschii (see paper)
    51% identity, 98% coverage of query (367 bits)

Q12W26 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcoides burtonii (see paper)
    45% identity, 96% coverage of query (350 bits)

Q8PVS9 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanosarcina mazei (see paper)
    45% identity, 98% coverage of query (347 bits)

SPSS1_ARCFU / O30207 O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC 2.5.1.73 from Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) (see paper)
O30207 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Archaeoglobus fulgidus (see 3 papers)
    47% identity, 96% coverage of query (347 bits)

A4FWT8 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcus maripaludis (see paper)
    47% identity, 97% coverage of query (330 bits)

2e7iA / O30207 Crystal structure of sep-trna:cys-tRNA synthase from archaeoglobus fulgidus (see paper)
    45% identity, 94% coverage of query (303 bits)

Build an alignment

Build an alignment for WP_012966499.1 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory