Sites on a Tree

 

Searching for up to 100 curated homologs for WP_013134570.1 NCBI__GCF_000092245.1:WP_013134570.1 (617 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Shew_2371 actP-like component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    59% identity, 100% coverage of query (686 bits)

Sama_1523 actP-like component of lactate uptake system from Shewanella amazonensis SB2B
    59% identity, 100% coverage of query (660 bits)

Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) from Pseudomonas stutzeri RCH2
    54% identity, 99% coverage of query (601 bits)

HP15_1251 large component of pyruvate transporter (actP-like) from Marinobacter adhaerens HP15
    54% identity, 99% coverage of query (585 bits)

Build an alignment

Build an alignment for WP_013134570.1 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Psest_3078 L-proline:Na+ symporter from Pseudomonas stutzeri RCH2
    24% identity, 97% coverage of query (65.5 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory