Searching for up to 100 curated homologs for WP_013135189.1 NCBI__GCF_000092245.1:WP_013135189.1 (375 a.a.)
Found high-coverage hits (≥70%) to 25 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
3td9A / Q9X0L9 Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
38% identity, 93% coverage of query (235 bits)
TC 3.A.1.4.10 / Q8DQI1 ABC transporter substrate-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM from Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
32% identity, 94% coverage of query (156 bits)
4gnrA / J9PBT7 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
32% identity, 94% coverage of query (155 bits)
Build an alignment for WP_013135189.1 and 3 homologs with ≥ 30% identity
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LivJ / b3460 branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655 (see 12 papers)
LivJ / P0AD96 branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli (strain K12) (see 12 papers)
TC 3.A.1.4.1 / P0AD96 Leu/Ile/Val-binding protein LivJ aka B3460 aka LIV-BP, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli (see 9 papers)
29% identity, 94% coverage of query (125 bits)
1z16A / P0AD96 Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
29% identity, 87% coverage of query (117 bits)
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine
29% identity, 87% coverage of query (117 bits)
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine
29% identity, 87% coverage of query (117 bits)
LIVB3_RHIJ3 / Q1MDE9 Leu/Ile/Val-binding protein BraC3 from Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841) (Rhizobium leguminosarum bv. viciae) (see paper)
28% identity, 91% coverage of query (112 bits)
4n0qB / Q8YEE8 Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
24% identity, 87% coverage of query (110 bits)
Pf6N2E2_2921 ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK from Pseudomonas fluorescens FW300-N2E2
30% identity, 71% coverage of query (106 bits)
HrbC / b3458 L-leucine/L-phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655 (see 17 papers)
livK / P04816 L-leucine/L-phenylalanine ABC transporter periplasmic binding protein (EC 7.4.2.2) from Escherichia coli (strain K12) (see 16 papers)
TC 3.A.1.4.1 / P04816 Livk aka B3458, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli (see 9 papers)
livK leucine-specific-binding protein LivK from Escherichia coli K12 (see 9 papers)
28% identity, 74% coverage of query (104 bits)
BRAC_PSEAE / P21175 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; LIVAT-BP; Leu/Ile/Val/Thr/Ala-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
TC 3.A.1.4.8 / P21175 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
27% identity, 71% coverage of query (102 bits)
PS417_06615 ABC transporter for branched-chain amino acids, substrate-binding component from Pseudomonas simiae WCS417
28% identity, 71% coverage of query (102 bits)
HSERO_RS00870 L-proline ABC transporter, substrate-binding component from Herbaspirillum seropedicae SmR1
30% identity, 76% coverage of query (96.7 bits)
AABP_PSEAE / Q9HUQ0 Amino acid binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
28% identity, 71% coverage of query (92.4 bits)
4eygB / Q13AR6 Crystal structure of solute binding protein of abc transporter from rhodopseudomonas palustris bisb5 in complex with vanillic acid (see paper)
25% identity, 82% coverage of query (85.1 bits)
AZOBR_RS08260 L-proline and D-alanine ABC transporter, substrate-binding component from Azospirillum brasilense Sp245
26% identity, 89% coverage of query (84.0 bits)
4dqdA / Q2IR47 The crystal structure of a transporter in complex with 3-phenylpyruvic acid (see paper)
24% identity, 91% coverage of query (75.5 bits)
3sg0A The crystal structure of an extracellular ligand-binding receptor from rhodopseudomonas palustris haa2
24% identity, 91% coverage of query (75.5 bits)
4zpjA / D1C6A8 Abc transporter substrate-binding protein from sphaerobacter thermophilus
25% identity, 72% coverage of query (70.5 bits)
TC 3.A.1.4.3 / Q9L3M3 BraC, component of General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be α since γ-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC from Rhizobium leguminosarum (biovar viciae) (see 2 papers)
braC / CAB75553.1 periplasmic binding protein from Rhizobium leguminosarum bv. viciae (see 2 papers)
23% identity, 93% coverage of query (66.2 bits)
TC 3.A.1.4.2 / Q55387 NatB aka SLR0559, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (see paper)
23% identity, 90% coverage of query (56.6 bits)
TC 3.A.1.4.7 / Q92TN0 ABC transporter, periplasmic solute-binding protein, component of The protocatechuate (3,4-dihydroxybenzoate) uptake porter, PcaMNVWX from Rhizobium meliloti (strain 1021)
22% identity, 93% coverage of query (54.3 bits)
4q6wA / Q7VS30 Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
22% identity, 87% coverage of query (48.9 bits)
4jb0A / Q6N8W4 Rhodopseudomonas palustris (strain cga009) rp1789 transport protein (see paper)
20% identity, 82% coverage of query (44.3 bits)
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Lawrence Berkeley National Laboratory