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Searching for up to 100 curated homologs for WP_013450358.1 NCBI__GCF_000183405.1:WP_013450358.1 (355 a.a.)

Found high-coverage hits (≥70%) to 36 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q9KNV2 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
    38% identity, 99% coverage of query (230 bits)

3okfA / Q9KNV2 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase (arob) from vibrio cholerae
    38% identity, 99% coverage of query (224 bits)

aroB / CAA05722.1 3-dehydroquinate synthetase from Neisseria gonorrhoeae (see paper)
    40% identity, 75% coverage of query (213 bits)

AROB_HELPY / P56081 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see paper)
    41% identity, 83% coverage of query (207 bits)

DHQS_SOLLC / Q8RU74 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
    40% identity, 76% coverage of query (204 bits)

Q3M4V2 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis (see paper)
    34% identity, 96% coverage of query (201 bits)

Q5NFS1 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
    37% identity, 93% coverage of query (199 bits)

5hvnA / Q5NFS1 3.0 angstrom crystal structure of 3-dehydroquinate synthase (arob) from francisella tularensis in complex with NAD.
    38% identity, 84% coverage of query (193 bits)

5eksA / V5V8R5 Structure of 3-dehydroquinate synthase from acinetobacter baumannii in complex with NAD
    42% identity, 73% coverage of query (186 bits)

6hqvA / G0S061 Pentafunctional arom complex from chaetomium thermophilum (see paper)
    35% identity, 78% coverage of query (186 bits)

P9WPX9 3-dehydroquinate synthase (EC 4.2.3.4) from Mycobacterium tuberculosis (see 3 papers)
    38% identity, 72% coverage of query (182 bits)

P9WPX9 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
    38% identity, 72% coverage of query (182 bits)

Q8U0A8 3-dehydroquinate synthase (EC 4.2.3.4) from Pyrococcus furiosus (see paper)
    40% identity, 84% coverage of query (181 bits)

Q6GGU4 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Staphylococcus aureus (strain MRSA252)
    35% identity, 90% coverage of query (174 bits)

3qbeA / P9WPX9 Crystal structure of the 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis
    37% identity, 72% coverage of query (173 bits)

1dqsA Crystal structure of dehydroquinate synthase (dhqs) complexed with carbaphosphonate, NAD+ and zn2+
    37% identity, 73% coverage of query (172 bits)

1xagA / Q6GGU4 Crystal structure of staphlyococcus aureus 3-dehydroquinate synthase (dhqs) in complex with zn2+, NAD+ and carbaphosphonate (see paper)
    35% identity, 90% coverage of query (170 bits)

1nvbB / P07547 Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+ and carbaphosphonate (see paper)
    36% identity, 73% coverage of query (169 bits)

1nr5B / P07547 Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+, NAD and carbaphosphonate (see paper)
    36% identity, 73% coverage of query (169 bits)

1nr5A / P07547 Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+, NAD and carbaphosphonate (see paper)
    36% identity, 73% coverage of query (169 bits)

1nrxA / P07547 Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+ and NAD (see paper)
    35% identity, 73% coverage of query (160 bits)

1nrxB / P07547 Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+ and NAD (see paper)
    35% identity, 73% coverage of query (160 bits)

1nvaA Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+ and adp
    35% identity, 73% coverage of query (158 bits)

ARO1 / P08566 pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
ARO1_YEAST / P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
    33% identity, 74% coverage of query (155 bits)

Build an alignment

Build an alignment for WP_013450358.1 and 24 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

4p53A / H2K887 Vala (2-epi-5-epi-valiolone synthase) from streptomyces hygroscopicus subsp. Jinggangensis 5008 with NAD+ and zn2+ bound (see paper)
    27% identity, 90% coverage of query (155 bits)

rifG / G0FS62 aminodehydroquinate synthase from Amycolatopsis mediterranei (strain S699) (see 2 papers)
RIFG_AMYMS / G0FS62 Putative aminodehydroquinate synthase; aDHQS; EC 4.2.3.- from Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei) (see paper)
    32% identity, 92% coverage of query (155 bits)

EEVS_STIAD / E3FKM2 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Stigmatella aurantiaca (strain DW4/3-1) (see paper)
    36% identity, 71% coverage of query (149 bits)

Amir_2000 / C6WFL3 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / JCM 3225 / NBRC 14064 / NCIMB 13271 / NRRL B-12336 / IMRU 3971 / 101) (see paper)
EVS_ACTMD / C6WFL3 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / JCM 3225 / NBRC 14064 / NCIMB 13271 / NRRL B-12336 / IMRU 3971 / 101) (see paper)
C6WFL3 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum (see paper)
    32% identity, 81% coverage of query (148 bits)

valA / H2K887 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Streptomyces hygroscopicus subsp. jinggangensis (strain 5008) (see 3 papers)
VALA_STRHJ / H2K887 2-epi-5-epi-valiolone synthase; EEVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.152 from Streptomyces hygroscopicus subsp. jinggangensis (strain 5008) (see 2 papers)
H2K887 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Streptomyces hygroscopicus (see paper)
valA / AAW88569.1 ValA from Streptomyces hygroscopicus subsp. jinggangensis (see paper)
valA / ABA41506.1 2-epi-5-epi-valiolone synthase from Streptomyces hygroscopicus subsp. jinggangensis (see paper)
    27% identity, 78% coverage of query (147 bits)

CETA_ACTSX / A1YPR2 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Actinomyces sp. (see paper)
A1YPR2 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Actinomyces sp. (see paper)
cetA / ABL74381.1 2-epi-5-epi-valiolone synthase from Actinomyces sp. Lu 9419 (see paper)
    31% identity, 72% coverage of query (139 bits)

EVS_STIAD / Q08VU0 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Stigmatella aurantiaca (strain DW4/3-1) (see paper)
Q08VU0 2-epi-valiolone synthase (EC 4.2.3.155) from Stigmatella aurantiaca (see paper)
    33% identity, 72% coverage of query (139 bits)

SALQ_STRA4 / A8D7K2 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Streptomyces albus (strain ATCC 21838 / DSM 41398 / FERM P-419 / JCM 4703 / NBRC 107858) (see paper)
A8D7K2 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Streptomyces albus (see paper)
    29% identity, 79% coverage of query (127 bits)

DDGS_TRIV2 / Q3M6C3 Demethyl-4-deoxygadusol synthase; DDGS; EC 4.2.3.154 from Trichormus variabilis (strain ATCC 29413 / PCC 7937) (Anabaena variabilis) (see 2 papers)
Q3M6C3 demethyl-4-deoxygadusol synthase (EC 4.2.3.154) from Trichormus variabilis (see paper)
    27% identity, 75% coverage of query (123 bits)

5tprA / Q3M6C3 Desmethyl-4-deoxygadusol synthase from anabaena variabilis (ava_3858) with NAD+ and zn2+ bound (see paper)
    27% identity, 75% coverage of query (123 bits)

eevs / E7EXW6 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Danio rerio (see paper)
    27% identity, 95% coverage of query (117 bits)

Nos2 / B2J6X9 desmethyl-4-deoxygadusol synthase (EC 4.2.3.154) from Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (see 2 papers)
DDGS_NOSP7 / B2J6X9 Demethyl-4-deoxygadusol synthase; DDGS; EC 4.2.3.154 from Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (see 2 papers)
    28% identity, 78% coverage of query (116 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory