Sites on a Tree

 

Searching for up to 100 curated homologs for WP_013537849.1 NCBI__GCF_000185805.1:WP_013537849.1 (474 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

B8R2M5 [Co(II) methylated amine-specific corrinoid protein] reductase (EC 1.16.99.1) from Acetobacterium dehalogenans (see paper)
    30% identity, 83% coverage of query (171 bits)

Build an alignment

Build an alignment for WP_013537849.1 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

RAMQ_EUBLI / P0DX10 Corrinoid activation enzyme RamQ from Eubacterium limosum (see 2 papers)
    28% identity, 81% coverage of query (154 bits)

3zyyX / Q3ACS2 Reductive activator for corrinoid,iron-sulfur protein (see paper)
    29% identity, 81% coverage of query (147 bits)

4c1nI Corrinoid protein reactivation complex with activator
    29% identity, 81% coverage of query (147 bits)

PGA1_c15200 ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens BS107
    28% identity, 85% coverage of query (135 bits)

DVU0908 ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris Hildenborough JW710
    26% identity, 97% coverage of query (103 bits)

DvMF_1398 ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris Miyazaki F
    26% identity, 75% coverage of query (73.6 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory