Searching for up to 100 curated homologs for WP_013553003.1 NCBI__GCF_000186245.1:WP_013553003.1 (255 a.a.)
Found high-coverage hits (≥70%) to 13 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
DAPF_THEMA / Q9X1L0 Diaminopimelate epimerase; DAP epimerase; Dpm epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
35% identity, 92% coverage of query (129 bits)
DAPF_ARATH / Q9LFG2 Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q9LFG2 diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana (see paper)
31% identity, 88% coverage of query (103 bits)
3ejxD / Q9LFG2 Crystal structure of diaminopimelate epimerase from arabidopsis thaliana in complex with ll-azidap (see paper)
30% identity, 90% coverage of query (103 bits)
3ekmA Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor dl-azidap
30% identity, 90% coverage of query (102 bits)
DapF / b3809 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
dapF / P0A6K1 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli (strain K12) (see 12 papers)
DAPF_ECOLI / P0A6K1 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli (strain K12) (see 6 papers)
31% identity, 81% coverage of query (89.4 bits)
DAPF_CORGL / Q8NP73 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534) (see paper)
Q8NP73 diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum (see paper)
33% identity, 75% coverage of query (88.6 bits)
5m47A / Q8NP73 Crystal structure of dapf from corynebacterium glutamicum in complex with d,l-diaminopimelate (see paper)
33% identity, 75% coverage of query (88.6 bits)
Build an alignment for WP_013553003.1 and 7 homologs with ≥ 30% identity
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DAPF_BACAN / Q81XR2 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis
29% identity, 89% coverage of query (85.1 bits)
DAPF_HAEIN / P44859 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 4 papers)
2gkeA / P44859 Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor ll-azidap (see paper)
30% identity, 78% coverage of query (85.1 bits)
2gkjA Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor dl-azidap
30% identity, 78% coverage of query (85.1 bits)
E4NI20 diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae (see paper)
33% identity, 78% coverage of query (75.1 bits)
DAPF_MYCTU / P9WP19 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
P9WP19 diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis (see 2 papers)
31% identity, 76% coverage of query (70.1 bits)
dcsC / D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae (see 2 papers)
DCSC_STRLA / D2Z026 O-ureido-serine racemase; EC 5.1.1.19 from Streptomyces lavendulae (see 3 papers)
D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae subsp. lavendulae (see 2 papers)
30% identity, 89% coverage of query (67.4 bits)
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