Sites on a Tree

 

Searching for up to 100 curated homologs for WP_013645946.1 NCBI__GCF_000191585.1:WP_013645946.1 (379 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

pscS / Q59072 Sep-tRNA:Cys-tRNA synthase monomer (EC 2.5.1.73) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (see 2 papers)
SPSS_METJA / Q59072 O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC 2.5.1.73 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see 2 papers)
Q59072 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanocaldococcus jannaschii (see 6 papers)
    61% identity, 97% coverage of query (476 bits)

5x6bJ / Q59072 Crystal structure of sepcyse-sepcyss in complex with trnacys from methanocaldococcus jannaschii (see paper)
    60% identity, 97% coverage of query (455 bits)

A4FWT8 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcus maripaludis (see paper)
    56% identity, 97% coverage of query (436 bits)

SPSS1_ARCFU / O30207 O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC 2.5.1.73 from Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) (see paper)
O30207 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Archaeoglobus fulgidus (see 3 papers)
    53% identity, 95% coverage of query (398 bits)

Q8PVS9 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanosarcina mazei (see paper)
    49% identity, 98% coverage of query (371 bits)

Q12W26 O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcoides burtonii (see paper)
    47% identity, 98% coverage of query (366 bits)

2e7iA / O30207 Crystal structure of sep-trna:cys-tRNA synthase from archaeoglobus fulgidus (see paper)
    49% identity, 95% coverage of query (358 bits)

Build an alignment

Build an alignment for WP_013645946.1 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

CNIF1_ARATH / Q93WX6 Cysteine desulfurase 1, chloroplastic; NIFS-like protein 1; CpNifS1; Plastid sufS-like protein; Protein AtCpNifS; Selenocysteine lyase; EC 2.8.1.7; EC 4.4.1.16 from Arabidopsis thaliana (Mouse-ear cress) (see 8 papers)
Q93WX6 cysteine desulfurase (EC 2.8.1.7) from Arabidopsis thaliana (see 2 papers)
    23% identity, 73% coverage of query (48.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory