Sites on a Tree

 

Searching for up to 100 curated homologs for WP_024851682.1 NCBI__GCF_000526715.1:WP_024851682.1 (95 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

GATC_STRP6 / Q5XAC6 Glutamyl-tRNA(Gln) amidotransferase subunit C; Glu-ADT subunit C; EC 6.3.5.- from Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
    32% identity, 100% coverage of query (53.1 bits)

gatC / O06492 glutamyl-tRNAGln amidotransferase subunit C (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
    30% identity, 98% coverage of query (51.6 bits)

GATC_ARATH / F4JV80 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Glu-AdT subunit C; EC 6.3.5.- from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    30% identity, 93% coverage of query (47.4 bits)

Build an alignment

Build an alignment for WP_024851682.1 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

gatC / Q9RUV6 glutamyl-tRNAGln amidotransferase subunit C (EC 6.3.5.7; EC 6.3.5.6) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see paper)
    28% identity, 93% coverage of query (43.9 bits)

3al0C / Q9WY94,Q9X2I8 Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
    29% identity, 87% coverage of query (42.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory