Sites on a Tree

 

Searching for up to 100 curated homologs for WP_027722289.1 NCBI__GCF_000425265.1:WP_027722289.1 (195 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

O07836 indolepyruvate ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.8) from Thermococcus kodakarensis (see paper)
    43% identity, 96% coverage of query (140 bits)

iorB / A0A5C0XRQ6 indolepyruvate ferredoxin oxidoreductase β subunit (EC 1.2.7.8) from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see paper)
    42% identity, 95% coverage of query (138 bits)

IORB_METTM / P80911 Indolepyruvate oxidoreductase subunit IorB; IOR; Indolepyruvate ferredoxin oxidoreductase subunit beta; EC 1.2.7.8 from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum) (see paper)
    37% identity, 97% coverage of query (131 bits)

Q6LZB5 indolepyruvate ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.8) from Methanococcus maripaludis (see paper)
    37% identity, 95% coverage of query (108 bits)

Q6M0F6 indolepyruvate ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.8) from Methanococcus maripaludis (see paper)
    33% identity, 98% coverage of query (93.2 bits)

Build an alignment

Build an alignment for WP_027722289.1 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

VORA_METTM / P80907 Ketoisovalerate oxidoreductase subunit VorA; VOR; 2-oxoisovalerate oxidoreductase alpha chain; 2-oxoisovalerate-ferredoxin oxidoreductase subunit alpha; EC 1.-.-.- from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum) (see paper)
    28% identity, 95% coverage of query (57.4 bits)

salQ / B0L7F0 5-chloro-4-hydroxy-2-oxopentanoate decarboxylase (acylating) from Salinispora tropica (see paper)
    24% identity, 84% coverage of query (44.3 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory