Sites on a Tree

 

Searching for up to 100 curated homologs for WP_029132936.1 NCBI__GCF_000428045.1:WP_029132936.1 (419 a.a.)

Found high-coverage hits (≥70%) to 86 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

8c0zE / Q5P142 Cryoem structure of a tungsten-containing aldehyde oxidoreductase from aromatoleum aromaticum (see paper)
    50% identity, 99% coverage of query (419 bits)

padH / Q8L3B0 phenylglyoxylate dehydrogenase (acylating) subunit PadH (EC 1.2.1.58) from Aromatoleum evansii (see 2 papers)
PADH_AROEV / Q8L3B0 NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon; Phenylglyoxylate:NAD oxidoreductase; Phenylglyoxylate:acceptor oxidoreductase; EC 1.2.1.58 from Aromatoleum evansii (Azoarcus evansii) (see paper)
    31% identity, 96% coverage of query (187 bits)

Build an alignment

Build an alignment for WP_029132936.1 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

narC nitrate reductase, NADH oxidase subunit from Clostridium perfringens (see paper)
    29% identity, 96% coverage of query (162 bits)

Q58065 NADH oxidase (H2O2-forming) (EC 1.6.3.3) from Methanocaldococcus jannaschii (see paper)
    31% identity, 76% coverage of query (161 bits)

GB|AAB98641.1 NADH oxidase; EC 1.-.-.- from Methanocaldococcus jannaschii DSM 2661 (see paper)
    31% identity, 76% coverage of query (161 bits)

Q5JFZ8 NAD(P)H oxidase (H2O2-forming) (EC 1.6.3.1) from Thermococcus kodakarensis (see 2 papers)
    29% identity, 80% coverage of query (151 bits)

Dshi_1667 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Dinoroseobacter shibae DFL-12
    28% identity, 99% coverage of query (142 bits)

Echvi_1901 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Echinicola vietnamensis KMM 6221, DSM 17526
    26% identity, 93% coverage of query (140 bits)

Pf6N2E2_2378 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Pseudomonas fluorescens FW300-N2E2
    29% identity, 95% coverage of query (140 bits)

6pfzA / O29847 Structure of a NAD-dependent persulfide reductase from a. Fulgidus (see paper)
    29% identity, 93% coverage of query (138 bits)

CA265_RS09995 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Pedobacter sp. GW460-11-11-14-LB5
    26% identity, 95% coverage of query (137 bits)

CCNA_00651 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Caulobacter crescentus NA1000
    29% identity, 89% coverage of query (136 bits)

Psest_1928 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Pseudomonas stutzeri RCH2
    27% identity, 95% coverage of query (136 bits)

NASB_BACSU / P42433 Assimilatory nitrate reductase electron transfer subunit from Bacillus subtilis (strain 168) (see 3 papers)
    28% identity, 92% coverage of query (134 bits)

NASD_BACSU / P42435 Nitrite reductase [NAD(P)H]; EC 1.7.1.4 from Bacillus subtilis (strain 168) (see 4 papers)
    26% identity, 94% coverage of query (133 bits)

Q6WRS9 nitrite reductase (NADH) (EC 1.7.1.15) from Rhodobacter capsulatus (see paper)
    30% identity, 89% coverage of query (132 bits)

PfGW456L13_4101 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Pseudomonas fluorescens GW456-L13
    28% identity, 95% coverage of query (132 bits)

AO353_00805 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Pseudomonas fluorescens FW300-N2E3
    27% identity, 95% coverage of query (132 bits)

Echvi_1912 Nitrate reductase (EC 1.7.99.4) from Echinicola vietnamensis KMM 6221, DSM 17526
    24% identity, 95% coverage of query (130 bits)

3cgbA / A0A6L7HMK7 Pyridine nucleotide complexes with bacillus anthracis coenzyme a- disulfide reductase: a structural analysis of dual NAD(p)h specificity (see paper)
    28% identity, 79% coverage of query (127 bits)

CA265_RS10015 Nitrate reductase (EC 1.7.99.4) from Pedobacter sp. GW460-11-11-14-LB5
    26% identity, 95% coverage of query (127 bits)

3cgeA Pyridine nucleotide complexes with bacillus anthracis coenzyme a- disulfide reductase: a structural analysis of dual NAD(p)h specificity
    28% identity, 79% coverage of query (127 bits)

3cgdA Pyridine nucleotide complexes with bacillus anthracis coenzyme a- disulfide reductase: a structural analysis of dual NAD(p)h specificity
    28% identity, 79% coverage of query (127 bits)

F6IXY6 NADH oxidase (H2O-forming) (EC 1.6.3.4) from Lactiplantibacillus pentosus (see paper)
    26% identity, 80% coverage of query (125 bits)

AIFM3_HUMAN / Q96NN9 Apoptosis-inducing factor 3; Apoptosis-inducing factor-like protein; EC 1.-.-.- from Homo sapiens (Human) (see paper)
    28% identity, 89% coverage of query (125 bits)

NSR_THEKO / Q5JGP4 NAD(P)H sulfur oxidoreductase (CoA-dependent); NSR; NAD(P)H oxidase (H2O-forming); NOX; EC 1.8.1.18; EC 1.6.3.2 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see 2 papers)
Q5JGP4 NAD(P)H oxidase (H2O2-forming) (EC 1.6.3.1); NAD(P)H oxidase (H2O-forming) (EC 1.6.3.2); NAD(P)H sulfur oxidoreductase (CoA-dependent) (EC 1.8.1.18) from Thermococcus kodakarensis (see 2 papers)
    27% identity, 78% coverage of query (124 bits)

3nt6A / A3QAV3 Structure of the shewanella loihica pv-4 nadh-dependent persulfide reductase c43s/c531s double mutant (see paper)
    28% identity, 73% coverage of query (124 bits)

Q2WFW5 NADH oxidase (H2O-forming) (EC 1.6.3.4) from Anaerocolumna aminovalerica (see 2 papers)
    25% identity, 79% coverage of query (123 bits)

RR42_RS31785 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Cupriavidus basilensis FW507-4G11
    26% identity, 95% coverage of query (122 bits)

AZOBR_RS18565 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Azospirillum brasilense Sp245
    26% identity, 95% coverage of query (122 bits)

DDMA1_STEMA / Q5S3I2 Dicamba O-demethylase 1, ferredoxin reductase component; Ferredoxin--NAD(+) reductase; EC 1.18.1.3 from Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas maltophilia) (see 3 papers)
    29% identity, 75% coverage of query (122 bits)

DDMA2_STEMA / Q5S3I1 Dicamba O-demethylase 2, ferredoxin reductase component; Ferredoxin--NAD(+) reductase; EC 1.18.1.3 from Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas maltophilia) (see paper)
    29% identity, 75% coverage of query (121 bits)

Q72HK3 NADH:ubiquinone reductase (H+-translocating) (EC 7.1.1.2) from Thermus thermophilus (see paper)
6ruzA / Q72HK3 Nadh-dependent coenzyme a disulfide reductase (see paper)
    28% identity, 75% coverage of query (121 bits)

6rvhA Nadh-dependent coenzyme a disulfide reductase soaked with menadione
    28% identity, 75% coverage of query (121 bits)

6rvbA Nadh-dependent coenzyme a disulfide reductase soaked with nadh
    28% identity, 75% coverage of query (121 bits)

Q8KRG4 NADH oxidase (H2O-forming) (EC 1.6.3.4) from Levilactobacillus brevis (see paper)
    26% identity, 77% coverage of query (120 bits)

5er0A / Q03Q85 Water-forming nadh oxidase from lactobacillus brevis (lbnox) (see paper)
    25% identity, 77% coverage of query (115 bits)

5vn0A Water-forming nadh oxidase from lactobacillus brevis (lbnox) bound to nadh.
    25% identity, 77% coverage of query (115 bits)

3fg2P / Q6N3B2 Crystal structure of ferredoxin reductase for the cyp199a2 system from rhodopseudomonas palustris (see paper)
    27% identity, 75% coverage of query (110 bits)

CTMF_CASD6 / W8X9R5 Probable ferredoxin reductase CtmF; EC 1.-.-.- from Castellaniella defragrans (strain DSM 12143 / CCUG 39792 / 65Phen) (Alcaligenes defragrans) (see paper)
    30% identity, 75% coverage of query (110 bits)

picB2 / A0A1X9WE60 6-hydroxypicolinate 3-monooxygenase subunit 2 from Alcaligenes faecalis (see paper)
    27% identity, 97% coverage of query (109 bits)

5vohA Crystal structure of engineered water-forming NADPH oxidase (tpnox) bound to NADPH. The g159a, d177a, a178r, m179s, p184r mutant of lbnox.
    24% identity, 77% coverage of query (109 bits)

cmtAa / Q51973 p-cumate 2,3-dioxygenase system, ferredoxin--NAD+ reductase component (EC 1.14.12.25) from Pseudomonas putida (see paper)
CMTAA_PSEPU / Q51973 p-cumate 2,3-dioxygenase system, ferredoxin--NAD(+) reductase component; EC 1.18.1.3 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
Q51973 p-cumate 2,3-dioxygenase (subunit 4/4) (EC 1.14.12.25) from Pseudomonas putida (see paper)
cmtAa / AAB62284.1 p-cumate dioxygenase ferredoxin reductase subunit from Pseudomonas putida (see 3 papers)
    25% identity, 96% coverage of query (108 bits)

2cduA / Q9F1X5 The crystal structure of water-forming NAD(p)h oxidase from lactobacillus sanfranciscensis (see paper)
    23% identity, 80% coverage of query (108 bits)

ABZR86_RS03855 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) from Dyella japonica UNC79MFTsu3.2
    25% identity, 91% coverage of query (108 bits)

camA / P16640 NADH-putidaredoxin reductase (EC 1.18.1.5) from Pseudomonas putida (see 4 papers)
CAMA_PSEPU / P16640 Putidaredoxin reductase CamA; Pdr; Putidaredoxin--NAD(+) reductase; EC 1.18.1.5 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 4 papers)
P16640 putidaredoxin-NAD+ reductase (EC 1.18.1.5) from Pseudomonas putida (see 9 papers)
    28% identity, 74% coverage of query (105 bits)

1q1wA / P16640 Crystal structure of putidaredoxin reductase from pseudomonas putida (see paper)
    28% identity, 74% coverage of query (105 bits)

8a56B / Q82ZQ9 Coenzyme a-persulfide reductase (coapr) from enterococcus faecalis (see paper)
    26% identity, 80% coverage of query (102 bits)

3lxdA / Q2GBV9 Crystal structure of ferredoxin reductase arr from novosphingobium aromaticivorans (see paper)
    28% identity, 80% coverage of query (101 bits)

3icsB Crystal structure of partially reduced bacillus anthracis coadr-rhd
    25% identity, 85% coverage of query (94.0 bits)

3ictA / A0A6L7H7X4 Crystal structure of reduced bacillus anthracis coadr-rhd (see paper)
    25% identity, 85% coverage of query (94.0 bits)

2bcpA Structural analysis of streptococcus pyogenes nadh oxidase: c44s nox with azide
    25% identity, 79% coverage of query (93.2 bits)

2bc0A / Q5XC60 Structural analysis of streptococcus pyogenes nadh oxidase: wild-type nox (see paper)
    24% identity, 79% coverage of query (93.2 bits)

NAOX_STRP6 / Q5XC60 NADH oxidase; NOXase; EC 1.6.3.4 from Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) (see paper)
    25% identity, 80% coverage of query (92.8 bits)

1f3pA Ferredoxin reductase (bpha4)-nadh complex
    27% identity, 91% coverage of query (88.2 bits)

2gr2A Crystal structure of ferredoxin reductase, bpha4 (oxidized form)
    26% identity, 91% coverage of query (88.2 bits)

2gr0A Crystal structure of ferredoxin reductase, bpha4 (oxidized form, NAD+ complex)
    26% identity, 91% coverage of query (88.2 bits)

8pxkA / Q52437 Structure of nadh-dependent ferredoxin reductase, bpha4, solved at wavelength 5.76 a (see paper)
    27% identity, 91% coverage of query (88.2 bits)

2yvjA Crystal structure of the ferredoxin-ferredoxin reductase (bpha3- bpha4)complex
    27% identity, 91% coverage of query (88.2 bits)

4h4uA Crystal structure of ferredoxin reductase, bpha4 t176r mutant (reduced form)
    27% identity, 91% coverage of query (87.8 bits)

4h4wA Crystal structure of ferredoxin reductase, bpha4 e175c/t176r/q177g mutant (reduced form)
    26% identity, 91% coverage of query (87.4 bits)

3kljA / Q9AL95 Crystal structure of nadh:rubredoxin oxidoreductase from clostridium acetobutylicum (see paper)
    23% identity, 89% coverage of query (87.4 bits)

NROR_CLOAB / Q9AL95 NADH-rubredoxin oxidoreductase; NROR; NADH:rubredoxin oxidoreductase; EC 1.18.1.1 from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) (see 7 papers)
Q9AL95 rubredoxin-NAD+ reductase (EC 1.18.1.1) from Clostridium acetobutylicum (see 2 papers)
    23% identity, 89% coverage of query (87.4 bits)

1f8wA / P37062 Crystal structure of nadh peroxidase mutant: r303m (see paper)
    25% identity, 76% coverage of query (87.0 bits)

2npxA Nadh binding site and catalysis of nadh peroxidase
    25% identity, 76% coverage of query (86.7 bits)

NAPE_ENTFA / P37062 NADH peroxidase; NPXase; Npx; EC 1.11.1.1 from Enterococcus faecalis (strain ATCC 700802 / V583) (see 2 papers)
    25% identity, 76% coverage of query (86.3 bits)

NAOX_STREE / O84925 NADH oxidase; NOXase; EC 1.6.3.4 from Streptococcus pneumoniae (see 2 papers)
    23% identity, 80% coverage of query (80.9 bits)

3oc4A / Q833L5 Crystal structure of a pyridine nucleotide-disulfide family oxidoreductase from the enterococcus faecalis v583
    24% identity, 76% coverage of query (70.1 bits)

8d3gA Crystal structure of human apoptosis-inducing factor (aif) w196a mutant complexed with 6-chloroquinolin-4-amine
    24% identity, 75% coverage of query (69.7 bits)

8d3jA Crystal structure of human apoptosis-inducing factor (aif) complexed with 6-fluoro-2-methylquinolin-4-amine
    24% identity, 75% coverage of query (68.9 bits)

8d3oA Crystal structure of human apoptosis-inducing factor (aif) complexed with 8-methoxyquinolin-4-amine
    24% identity, 75% coverage of query (66.2 bits)

8d3kA Crystal structure of human apoptosis-inducing factor (aif) complexed with 8-fluoro-2-methylquinolin-4-amine
    24% identity, 75% coverage of query (66.2 bits)

8d3eA Crystal structure of human apoptosis-inducing factor (aif) w196a mutant complexed with 6-fluoroquinolin-4-amine
    24% identity, 75% coverage of query (65.9 bits)

8d3iA / O95831 Crystal structure of human apoptosis-inducing factor (aif) w196a mutant complexed with quinolin-4-amine (see paper)
    24% identity, 75% coverage of query (65.9 bits)

AIFM1 / O95831 apoptosis-inducing factor 1, mitochondrial (EC 1.6.5.9) from Homo sapiens (see 6 papers)
AIFM1_HUMAN / O95831 Apoptosis-inducing factor 1, mitochondrial; Programmed cell death protein 8; EC 1.6.99.- from Homo sapiens (Human) (see 21 papers)
O95831 NADH:ubiquinone reductase (H+-translocating) (EC 7.1.1.2) from Homo sapiens (see paper)
    24% identity, 75% coverage of query (65.9 bits)

8d3hA Crystal structure of human apoptosis-inducing factor (aif) w196a mutant complexed with 7-chloroquinolin-4-amine
    24% identity, 75% coverage of query (65.5 bits)

5fs9B / O95831 Crystal structure of the g338e mutant of human apoptosis inducing factor (see paper)
    23% identity, 75% coverage of query (65.1 bits)

3gd3A Crystal structure of a naturally folded murine apoptosis inducing factor
    23% identity, 75% coverage of query (63.9 bits)

8qnsJ Crystal structure of murine aif bound to n-terminal domain of chchd4
    23% identity, 75% coverage of query (63.9 bits)

3gd4A Crystal structure of the reduced, NAD-bound form of murine apoptosis inducing factor
    23% identity, 75% coverage of query (63.9 bits)

3gd4B Crystal structure of the reduced, NAD-bound form of murine apoptosis inducing factor
    23% identity, 75% coverage of query (63.9 bits)

8qnsD Crystal structure of murine aif bound to n-terminal domain of chchd4
    23% identity, 75% coverage of query (63.9 bits)

AIFM1_MOUSE / Q9Z0X1 Apoptosis-inducing factor 1, mitochondrial; Programmed cell death protein 8; EC 1.6.99.- from Mus musculus (Mouse) (see 6 papers)
    23% identity, 75% coverage of query (63.5 bits)

1gv4A / Q9Z0X1 Murine apoptosis-inducing factor (aif) (see paper)
    23% identity, 75% coverage of query (63.2 bits)

Lpd / b0116 lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli K-12 substr. MG1655 (see 9 papers)
lpd / P0A9P0 lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli (strain K12) (see 19 papers)
DLDH_ECOLI / P0A9P0 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; Glycine cleavage system L protein; EC 1.8.1.4 from Escherichia coli (strain K12) (see paper)
P0A9P0 pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli (see 4 papers)
lpd / SP|P0A9P1 dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Escherichia coli K12 (see 10 papers)
    26% identity, 71% coverage of query (56.2 bits)

4jdrA / P0A9P0 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase from escherichia coli (see paper)
    26% identity, 71% coverage of query (56.2 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory