Sites on a Tree

 

Searching for up to 100 curated homologs for WP_029133237.1 NCBI__GCF_000428045.1:WP_029133237.1 (342 a.a.)

Found high-coverage hits (≥70%) to 32 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

ARGC_ARATH / Q93Z70 Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Arabidopsis thaliana (Mouse-ear cress)
    45% identity, 100% coverage of query (312 bits)

ARGC_GEOSE / Q07906 N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
    43% identity, 100% coverage of query (301 bits)

ARGC_ORYSJ / Q6AV34 Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Oryza sativa subsp. japonica (Rice) (see paper)
    44% identity, 100% coverage of query (301 bits)

lysY / Q4JAQ3 [amino-group carrier protein]-L-2-aminoadipate/[amino-group carrier protein]-L-glutamate phosphate reductase (EC 1.2.1.103; EC 1.2.1.106) from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (see paper)
Q4JAQ3 [amino-group carrier protein]-5-phospho-L-glutamate reductase (EC 1.2.1.106) from Sulfolobus acidocaldarius (see paper)
    39% identity, 100% coverage of query (248 bits)

Q5JFW1 [amino-group carrier protein]-5-phospho-L-glutamate reductase (EC 1.2.1.106) from Thermococcus kodakarensis (see paper)
    39% identity, 100% coverage of query (229 bits)

argC / CAB82479.1 N-acetyl-gamma-glutamyl-phosphate reductase from Streptomyces clavuligerus (see 3 papers)
    42% identity, 100% coverage of query (215 bits)

ArgC / b3958 N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
argC / P11446 N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli (strain K12) (see 4 papers)
ARGC_ECOLI / P11446 N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Escherichia coli (strain K12) (see paper)
P11446 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Escherichia coli (see paper)
    38% identity, 98% coverage of query (207 bits)

2i3gA / P9WPZ9 Crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase (rv1652) from mycobacterium tuberculosis in complex with NADP+. (see paper)
    40% identity, 99% coverage of query (204 bits)

P9WPZ9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Mycobacterium tuberculosis (see paper)
    40% identity, 99% coverage of query (204 bits)

7npjB Crystal structure of mycobacterium tuberculosis argc in complex with 6-phenoxy-3-pyridinamine
    40% identity, 99% coverage of query (204 bits)

7nphC Crystal structure of mycobacterium tuberculosis argc in complex with 5-methoxy-1,3-benzoxazole-2-carboxylic acid
    40% identity, 99% coverage of query (204 bits)

7notA Crystal structure of mycobacterium tuberculosis argc in complex with nicotinamide adenine dinucleotide phosphate (NADP+) and 5-methoxy-3- indoleacetic acid
    40% identity, 99% coverage of query (204 bits)

7nnrA Crystal structure of mycobacterium tuberculosis argc in complex with xanthene-9-carboxylic acid
    40% identity, 99% coverage of query (204 bits)

BT3759 N-succinylglutamylphosphate reductase (EC 1.2.1.-) from Bacteroides thetaiotaomicron VPI-5482
    36% identity, 98% coverage of query (200 bits)

CA265_RS18540 N-succinylglutamylphosphate reductase (EC 1.2.1.38) from Pedobacter sp. GW460-11-11-14-LB5
    35% identity, 99% coverage of query (200 bits)

2ozpA Crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase (ttha1904) from thermus thermophilus
    36% identity, 99% coverage of query (195 bits)

lysY / O50146 [amino-group carrier protein]-L-2-aminoadipate 6-phosphate reductase (EC 1.2.1.103) from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 2 papers)
LYSY_THET2 / O50146 [LysW]-L-2-aminoadipate 6-phosphate reductase; EC 1.2.1.103 from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 2 papers)
O50146 [amino group carrier protein]-6-phospho-L-2-aminoadipate reductase (EC 1.2.1.103); [amino-group carrier protein]-5-phospho-L-glutamate reductase (EC 1.2.1.106) from Thermus thermophilus (see paper)
    36% identity, 99% coverage of query (194 bits)

argC / CAB95020.1 n-acetylglutamate 5-semialdehyde dehydrogenase from Moritella abyssi (see paper)
    37% identity, 98% coverage of query (191 bits)

5einA / O50146 Crystal structure of c148a mutant of lysy from thermus thermophilus in complex with NADP+ and lysw-gamma-aminoadipic acid (see paper)
    35% identity, 99% coverage of query (180 bits)

Echvi_3847 N-succinylglutamylphosphate reductase (EC 1.2.1.-) from Echinicola vietnamensis KMM 6221, DSM 17526
    30% identity, 98% coverage of query (157 bits)

ABZR86_RS08700 N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Dyella japonica UNC79MFTsu3.2
    31% identity, 96% coverage of query (134 bits)

Build an alignment

Build an alignment for WP_029133237.1 and 21 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

ARG5,6 arginine biosynthetic enzyme activities from Candida albicans (see 3 papers)
    28% identity, 99% coverage of query (126 bits)

ARG56_SCHPO / P31318 Protein arg11, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
arg11 / GI|1204210 N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe (see 2 papers)
    29% identity, 98% coverage of query (122 bits)

ARG56_YEAST / Q01217 Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
Q01217 acetylglutamate kinase (EC 2.7.2.8) from Saccharomyces cerevisiae (see paper)
ARG5,6 / CAA40336.1 acetylglutamate kinase from Saccharomyces cerevisiae (see paper)
    30% identity, 97% coverage of query (105 bits)

Msed_0709 / A4YEN2 succinyl-CoA reductase (NADPH) subunit (EC 1.2.1.75; EC 1.2.1.76) from Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) (see 3 papers)
MCR_METS5 / A4YEN2 Malonyl CoA reductase (NADP); NADP-dependent malonyl CoA reductase; EC 1.2.1.75 from Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) (see paper)
    22% identity, 92% coverage of query (73.2 bits)

Ga0059261_0351 N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Sphingomonas koreensis DSMZ 15582
    25% identity, 98% coverage of query (72.8 bits)

SMc01801 N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Sinorhizobium meliloti 1021
    24% identity, 95% coverage of query (65.5 bits)

4dpkA / Q96YK1 Structure of malonyl-coenzyme a reductase from crenarchaeota (see paper)
    22% identity, 81% coverage of query (63.9 bits)

mcr / Q96YK1 malonyl-CoA reductase subunit (EC 1.2.1.75) from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (see paper)
MCR_SULTO / Q96YK1 Malonyl-CoA reductase; EC 1.2.1.75 from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii) (see paper)
Q96YK1 malonyl-CoA reductase (malonate semialdehyde-forming) (EC 1.2.1.75) from Sulfurisphaera tokodaii (see 3 papers)
    22% identity, 81% coverage of query (63.9 bits)

4dpmA Structure of malonyl-coenzyme a reductase from crenarchaeota in complex with coa
    22% identity, 81% coverage of query (63.9 bits)

4dplA Structure of malonyl-coenzyme a reductase from crenarchaeota in complex with NADP
    22% identity, 81% coverage of query (63.9 bits)

argC / CAC29374.1 acetylglutamylphosphate reductase from Rhizobium etli (see paper)
    23% identity, 95% coverage of query (57.8 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory