Sites on a Tree

 

Searching for up to 100 curated homologs for WP_037375641.1 NCBI__GCF_000428045.1:WP_037375641.1 (200 a.a.)

Found high-coverage hits (≥70%) to 27 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

padE / Q8L3B3 phenylglyoxylate dehydrogenase (acylating) subunit PadE (EC 1.2.1.58) from Aromatoleum evansii (see 2 papers)
PADE_AROEV / Q8L3B3 NADH-dependent phenylglyoxylate dehydrogenase subunit gamma; Phenylglyoxylate:NAD oxidoreductase; Phenylglyoxylate:acceptor oxidoreductase; EC 1.2.1.58 from Aromatoleum evansii (Azoarcus evansii) (see paper)
    57% identity, 91% coverage of query (228 bits)

W8CQB1 pyruvate synthase (subunit 2/4) (EC 1.2.7.1); pyruvate decarboxylase (subunit 2/4) (EC 4.1.1.1) from Thermococcus guaymasensis (see paper)
    43% identity, 91% coverage of query (146 bits)

Q51799 pyruvate synthase (subunit 1/4) (EC 1.2.7.1) from Pyrococcus furiosus (see 2 papers)
    46% identity, 78% coverage of query (145 bits)

P80523 pyruvate synthase (subunit 2/4) (EC 1.2.7.1) from Methanosarcina barkeri (see paper)
    40% identity, 87% coverage of query (137 bits)

PORC_METTM / P80902 Pyruvate synthase subunit PorC; Pyruvate oxidoreductase gamma chain; POR; Pyruvic-ferredoxin oxidoreductase subunit gamma; EC 1.2.7.1 from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum) (see paper)
    44% identity, 75% coverage of query (135 bits)

porC / O27772 pyruvate synthase subunit γ (EC 1.2.7.1) from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (see 7 papers)
    43% identity, 75% coverage of query (132 bits)

Q9P9E7 pyruvate synthase (subunit 2/5) (EC 1.2.7.1) from Methanococcus maripaludis (see paper)
    41% identity, 88% coverage of query (125 bits)

porC / O05650 pyruvate:ferredoxin oxidoreductase γ subunit (EC 1.2.7.1) from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 7 papers)
O05650 pyruvate synthase (subunit 2/4) (EC 1.2.7.1) from Thermotoga maritima (see 2 papers)
    34% identity, 90% coverage of query (102 bits)

D3DIA3 2-oxoglutarate synthase (subunit 3/5) (EC 1.2.7.3) from Hydrogenobacter thermophilus (see 2 papers)
    30% identity, 74% coverage of query (74.7 bits)

Build an alignment

Build an alignment for WP_037375641.1 and 9 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Q8RCI3 pyruvate synthase (EC 1.2.7.1) from Caldanaerobacter subterraneus subsp. tengcongensis (see paper)
    27% identity, 95% coverage of query (58.5 bits)

A0A097APA2 pyruvate synthase (EC 1.2.7.1) from Thermoanaerobacter kivui (see paper)
    27% identity, 95% coverage of query (57.8 bits)

porG / Q9LBF7 pyruvate:ferredoxin oxidoreductase γ subunit (EC 1.2.7.1) from Hydrogenobacter thermophilus (see 2 papers)
D3DJJ8 pyruvate synthase (subunit 1/2) (EC 1.2.7.1) from Hydrogenobacter thermophilus (see paper)
porG / BAA95607.1 pyruvate:ferredoxin oxidoreductase gamma subunit from Hydrogenobacter thermophilus (see paper)
    27% identity, 89% coverage of query (55.1 bits)

7plmA / P94692 Cryoem reconstruction of pyruvate ferredoxin oxidoreductase (pfor) in anaerobic conditions (see paper)
    25% identity, 80% coverage of query (50.1 bits)

6cinB / Q2RMD6 Crystal structure of pyruvate:ferredoxin oxidoreductase from moorella thermoacetica (see paper)
    24% identity, 96% coverage of query (50.1 bits)

PFOR_MOOTA / Q2RMD6 Pyruvate:ferredoxin oxidoreductase; PFOR; Pyruvate synthase; EC 1.2.7.1 from Moorella thermoacetica (strain ATCC 39073 / JCM 9320) (see 3 papers)
Q2RMD6 pyruvate synthase (EC 1.2.7.1) from Moorella thermoacetica (see paper)
    24% identity, 96% coverage of query (50.1 bits)

6ciqA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with coenzyme a bound
    24% identity, 96% coverage of query (50.1 bits)

6cioA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with lactyl-tpp bound
    24% identity, 96% coverage of query (50.1 bits)

6cipA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with acetyl-tpp bound
    24% identity, 96% coverage of query (50.1 bits)

I3VRD9 pyruvate synthase (EC 1.2.7.1) from Thermoanaerobacterium saccharolyticum (see paper)
    24% identity, 93% coverage of query (47.8 bits)

1b0pA / P94692 Crystal structure of pyruvate-ferredoxin oxidoreductase from desulfovibrio africanus (see paper)
    25% identity, 76% coverage of query (47.4 bits)

PFOR_DESAF / P94692 Pyruvate:ferredoxin oxidoreductase; PFOR; POR; Pyruvate synthase; EC 1.2.7.1 from Desulfocurvibacter africanus (Desulfovibrio africanus) (see 4 papers)
P94692 pyruvate synthase (EC 1.2.7.1) from Desulfocurvibacter africanus (see paper)
    25% identity, 76% coverage of query (47.4 bits)

2c3uA Crystal structure of pyruvate-ferredoxin oxidoreductase from desulfovibrio africanus, oxygen inhibited form
    25% identity, 76% coverage of query (47.4 bits)

2c3pA Crystal structure of the free radical intermediate of pyruvate:ferredoxin oxidoreductase from desulfovibrio africanus
    25% identity, 76% coverage of query (47.4 bits)

2c3oA Crystal structure of the free radical intermediate of pyruvate:ferredoxin oxidoreductase from desulfovibrio africanus
    25% identity, 76% coverage of query (47.4 bits)

1kekA Crystal structure of the free radical intermediate of pyruvate:ferredoxin oxidoreductase
    25% identity, 76% coverage of query (47.4 bits)

5exdH / Q2RI40 Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-di-oxido-methyl-tpp (coom-tpp) intermediate (see paper)
    28% identity, 82% coverage of query (47.0 bits)

5c4iE / Q2RI40 Structure of an oxalate oxidoreductase (see paper)
    27% identity, 82% coverage of query (43.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory