Sites on a Tree

 

Searching for up to 100 curated homologs for WP_043745402.1 NCBI__GCF_000009985.1:WP_043745402.1 (635 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

asnB / GB|CAB15032.1 asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis (see 4 papers)
    34% identity, 100% coverage of query (344 bits)

asnH / Q9CDJ2 peptidoglycan asparagine synthase from Lactococcus lactis subsp. lactis (strain IL1403) (see paper)
    33% identity, 91% coverage of query (304 bits)

ASNH_MYCBO / P64248 Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) (see paper)
    36% identity, 95% coverage of query (292 bits)

ltsA / BAD83576.1 glutamine amidotransferase from Rhodococcus erythropolis (see paper)
    35% identity, 100% coverage of query (288 bits)

ddaH / E2JA33 N-3-fumaroyl-(S)-2,3-diaminopropanoate aminotransferase from Enterobacter agglomerans (see 2 papers)
    32% identity, 100% coverage of query (276 bits)

Build an alignment

Build an alignment for WP_043745402.1 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

asnO / GI|1934835 asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis (see 3 papers)
    29% identity, 89% coverage of query (226 bits)

oxyD / L8EVF2 malonamoyl-CoA synthetase from Streptomyces rimosus subsp. rimosus (strain ATCC 10970 / DSM 40260 / JCM 4667 / NRRL 2234) (see 3 papers)
    31% identity, 90% coverage of query (216 bits)

CHRY2_GIBZE / I1S3K8 Amidase chry2; Chrysogine biosynthesis cluster protein 2; EC 3.-.-.- from Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) (Wheat head blight fungus) (Fusarium graminearum) (see paper)
    28% identity, 95% coverage of query (209 bits)

CHYD_PENRW / B6HLP8 Amidase chyE; Chrysogine biosynthesis cluster protein D; EC 3.-.-.- from Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum) (see paper)
    29% identity, 95% coverage of query (192 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory