Sites on a Tree

 

Searching for up to 100 curated homologs for WP_050776516.1 NCBI__GCF_000170835.1:WP_050776516.1 (660 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Psest_0084 alpha-ketoglutarate TRAP transporter, 4TM/12TM components from Pseudomonas stutzeri RCH2
    36% identity, 97% coverage of query (365 bits)

HP15_723 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components from Marinobacter adhaerens HP15
    40% identity, 70% coverage of query (311 bits)

Dshi_1194 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components from Dinoroseobacter shibae DFL-12
    37% identity, 80% coverage of query (310 bits)

Build an alignment

Build an alignment for WP_050776516.1 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory