Searching for up to 100 curated homologs for WP_055435882.1 NCBI__GCF_001418085.1:WP_055435882.1 (308 a.a.)
Found high-coverage hits (≥70%) to 61 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
LNRL_BACSU / P94440 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- from Bacillus subtilis (strain 168) (see 2 papers)
32% identity, 87% coverage of query (153 bits)
natA / P46903 Na+ ABC efflux transporter ATP-binding protein (EC 7.2.2.4) from Bacillus subtilis (strain 168) (see paper)
NATA_BACSU / P46903 ABC transporter ATP-binding protein NatA; ABC-type Na(+) transporter; EC 7.2.2.4 from Bacillus subtilis (strain 168) (see 2 papers)
P46903 ABC-type Na+ transporter (EC 7.2.2.4) from Bacillus subtilis (see 2 papers)
TC 3.A.1.115.1 / P46903 NatA; ATP-binding transport protein (Na(+) ABC transporter), component of Na+ efflux pump NatAB from Bacillus subtilis (see 3 papers)
natA / GB|BAA22236.1 sodium extrusion ABC transporter, ATP-binding protein NatA from Bacillus subtilis (see paper)
34% identity, 72% coverage of query (151 bits)
TC 3.A.1.146.1 / Q9ZBX4 ABC transporter ATP-binding protein, component of The probable actinorhodin (ACT) and undecylprodigiosin (RED) exporter (Lee et al. 2012), AreABCD (Sco3956-9) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
33% identity, 79% coverage of query (145 bits)
TC 3.A.1.132.1 / O30489 GldA, component of The GldAFG putative ABC transporter required for ratchet-type gliding motility; may function in secretion of a macromolecule such as an exopolysaccharide. (Agarwal et al., 1997; Hunnicutt et al., 2002; McBride and Zhu 2013). Soluble GldG homologues (no TMSs) are found in eukaryotes (e.g. intraflagellar protein transporter, IPT52 of Chlamydomonas reinhardtii; XP_001692161) from Cytophaga johnsonae (Flavobacterium johnsoniae) (see paper)
36% identity, 73% coverage of query (143 bits)
sagG / GI|23305059 ABC transporter, ATP-binding protein SagG from Streptococcus iniae (see paper)
33% identity, 72% coverage of query (135 bits)
YbhF / b0794 ABC exporter ATP binding subunit YbhF (EC 7.6.2.2) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
ybhF / P0A9U1 ABC exporter ATP binding subunit YbhF (EC 7.6.2.2) from Escherichia coli (strain K12) (see 6 papers)
YBHF_ECOLI / P0A9U1 Probable multidrug ABC transporter ATP-binding protein YbhF from Escherichia coli (strain K12) (see paper)
ybhF / MB|P0A9U1 uncharacterized ABC transporter ATP-binding protein ybhF from Escherichia coli K12 (see paper)
31% identity, 71% coverage of query (131 bits)
YXLF_BACSU / P94374 Uncharacterized ABC transporter ATP-binding protein YxlF; EC 7.-.-.- from Bacillus subtilis (strain 168) (see paper)
30% identity, 98% coverage of query (128 bits)
Build an alignment for WP_055435882.1 and 7 homologs with ≥ 30% identity
Or download the sequences
TC 3.A.1.105.2 / Q53716 OleC4, component of Oleandomycin (drug resistance) exporter from Streptomyces antibioticus (see paper)
27% identity, 97% coverage of query (127 bits)
MEATP_MYCTU / O86311 Multidrug efflux system ATP-binding protein Rv1218c; EC 7.6.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
33% identity, 72% coverage of query (127 bits)
TC 3.A.1.105.4 / Q4VWC9 PltI, component of The pyoluteorin (a chlorinated polyketide) efflux pump, PltHIJKN (see 2 papers)
33% identity, 71% coverage of query (126 bits)
BCRA_ENTFL / Q5WNX0 Bacitracin transport ATP-binding protein BcrA from Enterococcus faecalis (Streptococcus faecalis) (see 2 papers)
31% identity, 75% coverage of query (125 bits)
TC 3.A.1.105.8 / Q7UE58 ABC-type multidrug transport system, ATPase component, component of ABC-2 transporter from Rhodopirellula baltica (strain SH1)
28% identity, 74% coverage of query (125 bits)
YhiG / b3486 ribosome-associated ATPase from Escherichia coli K-12 substr. MG1655 (see 13 papers)
RBBA_ECOLI / P37624 Ribosome-associated ATPase; Ribosomal bound ATPase from Escherichia coli (strain K12) (see 5 papers)
yhiH / RF|YP_026225 uncharacterized ABC transporter ATP-binding protein yhiH from Escherichia coli K12 (see paper)
28% identity, 92% coverage of query (122 bits)
TC 3.A.1.126.1 / Q8RME1 BerA, component of Exporter of β-exotoxin I, BerAB from Bacillus thuringiensis serovar thuringiensis (see 2 papers)
32% identity, 71% coverage of query (122 bits)
TC 3.A.1.132.2 / Q52900 NosF, component of The NosDFY Copper ABC transporter from Rhizobium meliloti (Sinorhizobium meliloti) (see 2 papers)
nosF / AAC44025.1 NosF protein from Sinorhizobium meliloti (see paper)
33% identity, 72% coverage of query (122 bits)
TC 3.A.1.124.5 / Q09II0 SboF, component of The salivaricin exporter, SboEFG from Streptococcus salivarius (see paper)
32% identity, 71% coverage of query (122 bits)
TC 3.A.1.124.4 / A6MER5 McdF, component of The macedocin exporter, McdEFG from Streptococcus macedonicus (see paper)
30% identity, 75% coverage of query (121 bits)
4yerA / Q9X1C3 Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
31% identity, 72% coverage of query (116 bits)
ECSA_BACSU / P55339 ABC-type transporter ATP-binding protein EcsA from Bacillus subtilis (strain 168) (see paper)
TC 3.A.1.143.1 / P55339 ABC-type transporter ATP-binding protein EcsA, component of The exoprotein (including α-amylase) secretion system, EcsAB(C) (Leskelä et al., 1999). Also may play roles in sporulation, competence (Leskelä et al., 1996) and transformation using purified DNA (Takeno et al., 2011). An involvement of EcsC in transport is not established, but it is homologous to the C-terminus of the P-type ATPase, 3.A.3.31.2 from Bacillus subtilis (strain 168) (see 3 papers)
30% identity, 72% coverage of query (115 bits)
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide
30% identity, 73% coverage of query (109 bits)
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp
30% identity, 73% coverage of query (109 bits)
6mbnA / P0A9V1 Lptb e163q in complex with atp (see paper)
29% identity, 74% coverage of query (108 bits)
8f5bA / P78363 Human abca4 structure in complex with amp-pnp (see paper)
30% identity, 72% coverage of query (107 bits)
5x40A / O68106 Structure of a cbio dimer bound with amppcp (see paper)
29% identity, 71% coverage of query (107 bits)
7e7oA / P78363 Cryo-em structure of human abca4 in nrpe-bound state (see paper)
30% identity, 72% coverage of query (107 bits)
7o12B / P19844 Abc transporter nosdfy, amppnp-bound in gdn (see paper)
32% identity, 71% coverage of query (105 bits)
ABCAD_MOUSE / Q5SSE9 ATP-binding cassette sub-family A member 13; EC 7.6.2.- from Mus musculus (Mouse) (see 3 papers)
28% identity, 71% coverage of query (105 bits)
CED7_CAEEL / P34358 ABC transporter ced-7; Cell death protein 7 from Caenorhabditis elegans (see paper)
TC 3.A.1.211.4 / P34358 The aced cell death 7 (ced-7) protein (translocates molecules that mediate adhesion between dying and engulfing embryonic cells during programmed death) from Caenorhabditis elegans (see 4 papers)
ced-7 / RF|NP_001021226.1 ABC transporter ced-7 from Caenorhabditis elegans
30% identity, 72% coverage of query (105 bits)
7o17B Abc transporter nosdfy e154q, atp-bound in lipid nanodisc
31% identity, 71% coverage of query (104 bits)
2d62A / O57933 Crystal structure of multiple sugar binding transport atp-binding protein
30% identity, 80% coverage of query (104 bits)
6xjiC / X5EJW5 Pmtcd abc exporter at c1 symmetry (see paper)
29% identity, 79% coverage of query (102 bits)
1g291 / Q9YGA6 Malk (see paper)
28% identity, 80% coverage of query (97.8 bits)
7tbwA / O95477 The structure of atp-bound abca1 (see paper)
28% identity, 76% coverage of query (96.3 bits)
PotA / b1126 spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
PotA / P69874 spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11) from Escherichia coli (strain K12) (see 5 papers)
POTA_ECOLI / P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.11.1 / P69874 Spermidine/putrescine import ATP-binding protein PotA aka B1126, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 9 papers)
potA / MB|P69874 spermidine/putrescine ABC transporter, ATP-binding protein PotA; EC 3.6.3.31 from Escherichia coli K12 (see 10 papers)
26% identity, 88% coverage of query (95.9 bits)
7tbyA / O95477 The structure of human abca1 in nanodisc (see paper)
29% identity, 71% coverage of query (94.0 bits)
4u00A / Q5SJ55 Crystal structure of ttha1159 in complex with adp (see paper)
27% identity, 70% coverage of query (91.7 bits)
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state
29% identity, 72% coverage of query (91.7 bits)
7ch6C / P63386 Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
29% identity, 72% coverage of query (91.7 bits)
7cgnB The overall structure of the mlafedb complex in atp-bound eqtall conformation (mutation of e170q on mlaf)
29% identity, 72% coverage of query (90.5 bits)
5lilA / Q2EHL8 Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
27% identity, 72% coverage of query (87.0 bits)
5lj7A / Q2EHL8 Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
27% identity, 72% coverage of query (86.7 bits)
TGD3_ARATH / Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
TC 3.A.1.27.2 / Q9AT00 Tdg3, component of The chloroplast lipid (trigalactosyl diacyl glycerol (TDG)) transporter, Tdg1,2,3 (Lu et al., 2007). Lipids such as mono- and digalactolipids are synthesized in the endoplasmic reticulum (ER) of plant cells and transferred to the thylakoid membranes of chloroplasts. Mutations in an outer chloroplastic envelope protein with 350 aas and 7 putative TMSs in the last 250 residues may catalyze translocation as part of a lipid transfer complex from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
22% identity, 73% coverage of query (82.8 bits)
7chaI / Q9HVW1 Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
25% identity, 70% coverage of query (80.5 bits)
ECFA1_STRT2 / Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
TC 3.A.1.25.6 / Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA 2, component of Riboflavin ECF transport system, EcfAA'T/RibU from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
25% identity, 86% coverage of query (72.0 bits)
3j5sD / P0A9W3 Etta binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics (see paper)
26% identity, 73% coverage of query (71.2 bits)
YjjK / b4391 energy-dependent translational throttle protein EttA from Escherichia coli K-12 substr. MG1655 (see 9 papers)
ETTA_ECOLI / P0A9W3 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Escherichia coli (strain K12) (see 2 papers)
CH_004211 ABC transporter, ATP-binding protein YjiK from Escherichia coli K12 (see paper)
26% identity, 73% coverage of query (71.2 bits)
ETTA_ECOL6 / A0A0H2VFI8 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
26% identity, 73% coverage of query (70.9 bits)
AB12G_ARATH / Q9C8K2 ABC transporter G family member 12; ABC transporter ABCG.12; AtABCG12; Protein ECERIFERUM 5; White-brown complex homolog protein 12; AtWBC12 from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
TC 3.A.1.204.4 / Q9C8K2 The plant cuticular wax and/or lipid metabolite exporter, CER5; ABCG12; WBC12 (in the plasma membrane of epidermal cells; secretes wax to the plant surface) from Arabidopsis thaliana (Mouse-ear cress) (see 8 papers)
WBC12 / RF|NP_175561.1 white-brown complex homolog protein 12 from Arabidopsis thaliana (see paper)
24% identity, 86% coverage of query (66.6 bits)
4m1mA / P21447 Corrected structure of mouse p-glycoprotein (see paper)
25% identity, 80% coverage of query (63.9 bits)
7zkaA Abcb1 v978c mutant (mabcb1) in the outward facing state bound to aac
24% identity, 80% coverage of query (63.5 bits)
7zk6A Abcb1 l335c mutant (mabcb1) in the outward facing state bound to 2 molecules of aac
24% identity, 80% coverage of query (63.5 bits)
7zk5A Abcb1 l335c mutant (mabcb1) in the outward facing state bound to aac
24% identity, 80% coverage of query (63.5 bits)
YHES_ECOL6 / A0A0H2VBH0 Probable ATP-binding protein YheS from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
27% identity, 76% coverage of query (63.5 bits)
6fn1A Zosuquidar and uic2 fab complex of human-mouse chimeric abcb1 (abcb1hm)
24% identity, 71% coverage of query (63.2 bits)
7zk4A The abcb1 l335c mutant (mabcb1) in the outward facing state
24% identity, 80% coverage of query (62.8 bits)
6q81A Structure of p-glycoprotein(abcb1) in the post-hydrolytic state
25% identity, 80% coverage of query (62.8 bits)
3g61A Structure of p-glycoprotein reveals a molecular basis for poly- specific drug binding
25% identity, 80% coverage of query (62.8 bits)
3g60A Structure of p-glycoprotein reveals a molecular basis for poly- specific drug binding
25% identity, 80% coverage of query (62.8 bits)
4xwkA P-glycoprotein co-crystallized with bde-100
23% identity, 73% coverage of query (62.8 bits)
8j5qD / P9WQJ5 Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
26% identity, 75% coverage of query (62.4 bits)
6qeeA Nanodisc reconstituted human-mouse chimeric abcb1 (abcb1hm)-eq mutant in complex with uic2 fab and zosuquidar.
23% identity, 71% coverage of query (62.0 bits)
Or start over
Lawrence Berkeley National Laboratory