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Searching for up to 100 curated homologs for WP_055444046.1 NCBI__GCF_001418105.1:WP_055444046.1 (563 a.a.)

Found high-coverage hits (≥70%) to 28 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

GsiA / b0829 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
gsiA / P75796 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli (strain K12) (see 3 papers)
GSIA_ECOLI / P75796 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 from Escherichia coli (strain K12) (see paper)
P75796 ABC-type glutathione transporter (EC 7.4.2.10) from Escherichia coli (see paper)
TC 3.A.1.5.11 / P75796 Hypothetical ABC transporter ATP-binding protein yliA, component of Glutathione porter, YliABCD or GsiABCD from Escherichia coli (see 4 papers)
    45% identity, 99% coverage of query (506 bits)

Q8ZQM4 ABC-type glutathione transporter (EC 7.4.2.10) from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
    44% identity, 99% coverage of query (494 bits)

YEJF_AGRFC / A9CKL2 Peptidoglycan transport ATP-binding protein YejF; EC 7.4.2.- from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see paper)
    42% identity, 98% coverage of query (449 bits)

TC 3.A.1.5.23 / Q9F9T4 EppD, component of The Ethylene diamine tetraacetate (EDTA) uptake porter, EppABCD (see 2 papers)
    41% identity, 99% coverage of query (435 bits)

SM_b21644 ABC transporter for D-Raffinose, ATPase component from Sinorhizobium meliloti 1021
    40% identity, 98% coverage of query (431 bits)

YejF / b2180 putative oligopeptide ABC transporter ATP binding subunit YejF (EC 7.4.2.6) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
YejF / P33916 putative oligopeptide ABC transporter ATP binding subunit YejF (EC 7.4.2.6) from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.5.21 / P33916 YejF, component of The Microcin C/peptide uptake porter, YejABEF from Escherichia coli (strain K12) (see 3 papers)
yejF / RF|NP_416685 uncharacterized ABC transporter ATP-binding protein yejF from Escherichia coli K12 (see paper)
    40% identity, 99% coverage of query (426 bits)

TC 3.A.1.5.26 / P63395 Uncharacterized ABC transporter ATP-binding protein Rv1281c/MT1318, component of The glutathione transporter, OppA (Dasgupta et al., 2010). OppA binds glutathione and the nanopeptide, bradykinin. Also regulates cytokine release, apoptosis and the innate immune response of macrophages infected with M. tuberculosis from Mycobacterium tuberculosis (see 2 papers)
    38% identity, 99% coverage of query (419 bits)

8j5qD / P9WQJ5 Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
    38% identity, 99% coverage of query (419 bits)

8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state
    38% identity, 99% coverage of query (417 bits)

8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state
    38% identity, 99% coverage of query (417 bits)

TC 3.A.1.5.24 / Q8ZNJ8 YejF, component of The antimicrobial peptide (protamine, melittin, polymyxin B, human defensin (HBD)-1 and HBD-2 exporter, YejABEF (Eswarappa et al., 2008). Prefers N-formyl methionine peptides, such as Microcin C (of prokaryotic origin) to non formylated peptides (of eukaryotic origin) from Salmonella typhimurium (see paper)
    40% identity, 99% coverage of query (414 bits)

TC 3.A.1.5.8 / Q97UG5 MalK, component of Maltose and maltooligosaccharide porter from Sulfolobus solfataricus (see paper)
    35% identity, 99% coverage of query (343 bits)

TC 3.A.1.5.17 / Q92NE8 PrbD, component of The proline betaine uptake porter from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
    34% identity, 99% coverage of query (338 bits)

Build an alignment

Build an alignment for WP_055444046.1 and 13 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

RbsA / b3749 ribose ABC transporter ATP binding subunit from Escherichia coli K-12 substr. MG1655 (see 5 papers)
RbsA / P04983 ribose ABC transporter ATP binding subunit from Escherichia coli (strain K12) (see 2 papers)
RBSA_ECOLI / P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.1 / P04983 RbsA aka B3749, component of Ribose porter from Escherichia coli (see 6 papers)
rbsA / GB|AAC76772.1 ribose transport, ATP-binding protein RbsA; EC 3.6.3.17 from Escherichia coli K12 (see 7 papers)
    23% identity, 89% coverage of query (111 bits)

1yqtA Rnase-l inhibitor
    23% identity, 89% coverage of query (104 bits)

5yv5A Crystal structure of the complex of archaeal ribosomal stalk protein ap1 and archaeal ribosome recycling factor aabce1.
    23% identity, 89% coverage of query (103 bits)

3bk7A / Q9UZA4 Structure of the complete abce1/rnaase-l inhibitor protein from pyrococcus abysii (see paper)
    22% identity, 88% coverage of query (97.1 bits)

P0A9U3 Probable ATP-binding protein YbiT from Escherichia coli (strain K12)
    24% identity, 93% coverage of query (88.6 bits)

YbiT / b0820 putative ATP-binding protein YbiT from Escherichia coli K-12 substr. MG1655 (see 7 papers)
YBIT_ECOL6 / P0A9U4 Probable ATP-binding protein YbiT from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
ybiT / MB|P0A9U3 uncharacterized ABC transporter ATP-binding protein ybiT from Escherichia coli K12 (see 2 papers)
    24% identity, 93% coverage of query (88.6 bits)

3j5sD / P0A9W3 Etta binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics (see paper)
    23% identity, 91% coverage of query (84.3 bits)

YjjK / b4391 energy-dependent translational throttle protein EttA from Escherichia coli K-12 substr. MG1655 (see 9 papers)
ETTA_ECOLI / P0A9W3 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Escherichia coli (strain K12) (see 2 papers)
CH_004211 ABC transporter, ATP-binding protein YjiK from Escherichia coli K12 (see paper)
    23% identity, 91% coverage of query (84.0 bits)

3ozxA Crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
    23% identity, 91% coverage of query (82.8 bits)

YHES_ECOL6 / A0A0H2VBH0 Probable ATP-binding protein YheS from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
    21% identity, 92% coverage of query (81.3 bits)

P63389 Probable ATP-binding protein YheS from Escherichia coli (strain K12)
    21% identity, 92% coverage of query (81.3 bits)

ETTA_ECOL6 / A0A0H2VFI8 Energy-dependent translational throttle protein EttA; Translational regulatory factor EttA; EC 3.6.1.- from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
    22% identity, 91% coverage of query (81.3 bits)

YcbH / b0949 ATP-binding protein Uup from Escherichia coli K-12 substr. MG1655 (see 17 papers)
UUP_ECOLI / P43672 ATP-binding protein Uup; EC 3.6.1.- from Escherichia coli (strain K12) (see 5 papers)
    21% identity, 90% coverage of query (79.0 bits)

8buu9 / W1SM44 8buu9 (see paper)
    23% identity, 94% coverage of query (78.2 bits)

7p7q0 7p7q0 (see paper)
    22% identity, 91% coverage of query (73.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory