Sites on a Tree

 

Searching for up to 100 curated homologs for WP_090443739.1 NCBI__GCF_900100495.1:WP_090443739.1 (589 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Shew_2371 actP-like component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    69% identity, 100% coverage of query (799 bits)

Sama_1523 actP-like component of lactate uptake system from Shewanella amazonensis SB2B
    69% identity, 100% coverage of query (786 bits)

Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) from Pseudomonas stutzeri RCH2
    57% identity, 99% coverage of query (634 bits)

HP15_1251 large component of pyruvate transporter (actP-like) from Marinobacter adhaerens HP15
    58% identity, 99% coverage of query (628 bits)

Build an alignment

Build an alignment for WP_090443739.1 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Psest_3078 L-proline:Na+ symporter from Pseudomonas stutzeri RCH2
    23% identity, 98% coverage of query (96.3 bits)

TC 2.A.21.2.3 / Q9I5F5 L-proline uptake porter, PutP from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    23% identity, 88% coverage of query (92.8 bits)

PUTP_SALTY / P10502 Sodium/proline symporter; Proline permease from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
    23% identity, 86% coverage of query (84.3 bits)

PutC / b1015 proline:Na+ symporter from Escherichia coli K-12 substr. MG1655 (see 7 papers)
putP / P07117 proline:Na+ symporter from Escherichia coli (strain K12) (see 12 papers)
PUTP_ECOLI / P07117 Sodium/proline symporter; Proline carrier; Proline permease; Propionate transporter from Escherichia coli (strain K12) (see 9 papers)
TC 2.A.21.2.1 / P07117 Proline:Na+ symporter, PutP from Escherichia coli (see 12 papers)
    23% identity, 85% coverage of query (84.3 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory