Searching for up to 100 curated homologs for YP_001313206.1 NCBI__GCF_000017145.1:YP_001313206.1 (355 a.a.)
Found high-coverage hits (≥70%) to 42 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
TC 3.A.1.2.5 / P25548 CVE1 aka ChvE aka ATU2348 aka AGR_C_4267, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter from Agrobacterium tumefaciens (see 4 papers)
77% identity, 99% coverage of query (542 bits)
chvE / CAC67776.1 sugar-binding protein from Brucella suis (see paper)
74% identity, 98% coverage of query (534 bits)
3urmA / P25548 Crystal structure of the periplasmic sugar binding protein chve (see paper)
78% identity, 92% coverage of query (530 bits)
3uugA Crystal structure of the periplasmic sugar binding protein chve
78% identity, 92% coverage of query (530 bits)
SBPA_AZOBR / P54083 Multiple sugar-binding periplasmic protein SbpA; Sugar-binding protein A from Azospirillum brasilense (see paper)
70% identity, 99% coverage of query (491 bits)
4wwhA / A0QT42 Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
65% identity, 92% coverage of query (439 bits)
4ys6A / A9KQP6 Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
51% identity, 92% coverage of query (327 bits)
TC 3.A.1.2.22 / Q8G3R1 Probable sugar binding protein of ABC transporter for pentoses, component of ABC sugar transporter that plays a role in the probiotic benefits through acetate production from Bifidobacterium longum (strain NCC 2705)
43% identity, 100% coverage of query (249 bits)
XylT / b3566 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.10) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
xylF / P37387 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.2.4 / P37387 XylF aka XYLT aka B3566, component of Xylose porter from Escherichia coli (see 5 papers)
xylF / GB|AAC76590.1 D-xylose ABC transporter, periplasmic D-xylose-binding protein from Escherichia coli K12 (see 7 papers)
38% identity, 91% coverage of query (181 bits)
3ma0A / P37387 Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
38% identity, 91% coverage of query (181 bits)
4rxuA / A9WDY0 Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
36% identity, 92% coverage of query (178 bits)
4ywhA / A6VLM7 Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
37% identity, 91% coverage of query (169 bits)
TC 3.A.1.2.26 / A6LW10 D-xylose ABC transporter, periplasmic substrate-binding protein, component of Xylose transporter, XylFGH (XylF (R), 359 aas; XylG (C), 525 aas; XylH (M), 389 aas from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
33% identity, 98% coverage of query (168 bits)
TC 3.A.1.2.24 / O50503 Solute-binding protein, component of XylFGH downstream of characterized transcriptional regulator, ROK7B7 (Sco6008); XylF (Sco6009); XylG (Sco6010); XylH (Sco6011)) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
34% identity, 91% coverage of query (143 bits)
PGA1_262p00430 glucose transporter, periplasmic substrate-binding component from Phaeobacter inhibens BS107
31% identity, 99% coverage of query (137 bits)
Dshi_2000 xylitol ABC transporter, periplasmic substrate-binding protein from Dinoroseobacter shibae DFL-12
30% identity, 91% coverage of query (122 bits)
Build an alignment for YP_001313206.1 and 16 homologs with ≥ 30% identity
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6s3tA / P0C0J8 P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
27% identity, 87% coverage of query (102 bits)
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae
27% identity, 87% coverage of query (102 bits)
4yo7A / Q9KAG4 Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
23% identity, 81% coverage of query (71.2 bits)
MglB / b2150 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 43 papers)
MglB / P0AEE5 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 42 papers)
MGLB_ECOLI / P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.3 / P0AEE5 D-galactose-binding periplasmic protein DGAL aka MglB aka B2150, component of Galactose/glucose (methyl galactoside) porter from Escherichia coli (see 10 papers)
27% identity, 80% coverage of query (69.3 bits)
2gbpA / P0AEE5 Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
27% identity, 80% coverage of query (68.9 bits)
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
27% identity, 80% coverage of query (68.9 bits)
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose
27% identity, 80% coverage of query (68.9 bits)
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside
27% identity, 80% coverage of query (68.9 bits)
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium
27% identity, 80% coverage of query (68.9 bits)
4z0nA / D1AWX5 Crystal structure of a periplasmic solute binding protein (ipr025997) from streptobacillus moniliformis dsm-12112 (smon_0317, target efi- 511281) with bound d-galactose
27% identity, 79% coverage of query (64.3 bits)
8fxtA Escherichia coli periplasmic glucose-binding protein glucose complex: acrylodan conjugate attached at w183c
27% identity, 80% coverage of query (63.9 bits)
5kwsA / Q8D072 Crystal structure of galactose binding protein from yersinia pestis in the complex with beta d glucose
25% identity, 80% coverage of query (61.2 bits)
APIBP_ACTSZ / A6VKQ8 D-apiose import binding protein; D-apiose binding SBP from Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) (see paper)
26% identity, 78% coverage of query (61.2 bits)
APIBP_RHIR8 / B9JK76 D-apiose import binding protein; D-apiose binding SBP from Rhizobium rhizogenes (strain K84 / ATCC BAA-868) (Agrobacterium radiobacter) (see paper)
27% identity, 79% coverage of query (60.8 bits)
TC 3.A.1.2.16 / Q1M4Q9 Periplasmic erythritol binding protein, component of The erythritol uptake permease, EryEFG (Yost et al., 2006) (probably orthologous to 3.A.1.2.11) from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
24% identity, 73% coverage of query (58.9 bits)
eryG / Q2YIY2 putative erythritol ABC transporter substrate-binding protein from Brucella abortus (strain 2308) (see 3 papers)
24% identity, 80% coverage of query (56.6 bits)
APIBP_RHIEC / Q2JZQ5 D-apiose import binding protein; D-apiose binding SBP from Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42) (see paper)
24% identity, 82% coverage of query (56.2 bits)
5ibqA / Q2JZQ5 Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
23% identity, 78% coverage of query (51.6 bits)
APIBP_PARG4 / B1G898 D-apiose import binding protein; D-apiose binding SBP from Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M) (see paper)
25% identity, 70% coverage of query (51.6 bits)
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
23% identity, 78% coverage of query (51.6 bits)
5dteB / A6VKG5 Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
22% identity, 73% coverage of query (48.1 bits)
RBSB_BACSU / P36949 Ribose import binding protein RbsB from Bacillus subtilis (strain 168) (see 2 papers)
23% identity, 85% coverage of query (47.4 bits)
4ry9A / A1WJM2 Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
22% identity, 87% coverage of query (47.0 bits)
PS417_12055 xylitol ABC transporter, substrate-binding component from Pseudomonas simiae WCS417
25% identity, 76% coverage of query (47.0 bits)
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
22% identity, 87% coverage of query (47.0 bits)
2ioyA / Q8RD41 Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
21% identity, 78% coverage of query (45.1 bits)
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Lawrence Berkeley National Laboratory