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Searching for up to 100 curated homologs for YP_002827714.1 NCBI__GCF_000018545.1:YP_002827714.1 (306 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

DAPF_ARATH / Q9LFG2 Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q9LFG2 diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana (see paper)
    38% identity, 90% coverage of query (186 bits)

3ejxD / Q9LFG2 Crystal structure of diaminopimelate epimerase from arabidopsis thaliana in complex with ll-azidap (see paper)
    38% identity, 90% coverage of query (185 bits)

3ekmA Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor dl-azidap
    38% identity, 90% coverage of query (184 bits)

DapF / b3809 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
dapF / P0A6K1 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli (strain K12) (see 12 papers)
DAPF_ECOLI / P0A6K1 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli (strain K12) (see 6 papers)
    37% identity, 90% coverage of query (164 bits)

DAPF_HAEIN / P44859 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 4 papers)
2gkeA / P44859 Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor ll-azidap (see paper)
    36% identity, 90% coverage of query (160 bits)

2gkjA Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor dl-azidap
    36% identity, 90% coverage of query (160 bits)

DAPF_BACAN / Q81XR2 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis
    35% identity, 88% coverage of query (151 bits)

dcsC / D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae (see 2 papers)
DCSC_STRLA / D2Z026 O-ureido-serine racemase; EC 5.1.1.19 from Streptomyces lavendulae (see 3 papers)
D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae subsp. lavendulae (see 2 papers)
    37% identity, 90% coverage of query (120 bits)

Build an alignment

Build an alignment for YP_002827714.1 and 8 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory