Sites on a Tree

 

Searching for up to 100 curated homologs for YmcF (62 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

Removed hits that are identical to the query, leaving 1

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

YnfQ Qin prophage; protein YnfQ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
YNFQ_ECOLI / P0DPC9 Protein YnfQ from Escherichia coli (strain K12) (see paper)
    66% identity, 100% coverage of query (96.3 bits)

Build an alignment

Build an alignment for YmcF and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory