Searching for up to 100 curated homologs for mRNA_3724 (52 a.a.)
Found high-coverage hits (≥70%) to 91 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
H2B1_YEAST / P02293 Histone H2B.1; Suppressor of Ty protein 12 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 13 papers)
84% identity, 98% coverage of query (90.9 bits)
H2B2_YEAST / P02294 Histone H2B.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 14 papers)
84% identity, 98% coverage of query (90.9 bits)
1id3D Crystal structure of the yeast nucleosome core particle reveals fundamental differences in inter-nucleosome interactions
84% identity, 98% coverage of query (90.1 bits)
orf19.1052 histone H2B from Candida albicans (see paper)
84% identity, 96% coverage of query (89.4 bits)
H2B1_SCHPO / P04913 Histone H2B-alpha; H2B.1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
htb1 / RF|NP_588181.1 histone H2B Htb1 from Schizosaccharomyces pombe (see paper)
82% identity, 98% coverage of query (89.0 bits)
4m6bD / P02293,Q12692 Crystal structure of yeast swr1-z domain in complex with h2a.Z-h2b dimer (see paper)
85% identity, 92% coverage of query (87.4 bits)
H2B11_ARATH / P40283 Histone H2B.11; HTB4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
78% identity, 98% coverage of query (85.9 bits)
H2B2E_MOUSE / Q64524 Histone H2B type 2-E; H2B-clustered histone 21; H2b 613 from Mus musculus (Mouse) (see 6 papers)
77% identity, 100% coverage of query (85.9 bits)
H2B1F_MOUSE / P10853 Histone H2B type 1-F/J/L; H2B 291A from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.9 bits)
H2B1L_HUMAN / Q99880 Histone H2B type 1-L; Histone H2B.c; H2B/c from Homo sapiens (Human) (see 7 papers)
75% identity, 100% coverage of query (85.9 bits)
H2B1_CHLRE / P50565 Histone H2B.1; H2B-I from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 2 papers)
78% identity, 96% coverage of query (85.9 bits)
H2B1P_MOUSE / Q8CGP2 Histone H2B type 1-P from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.9 bits)
H2B2_CHLRE / P54345 Histone H2B.2; H2B-II from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 2 papers)
78% identity, 96% coverage of query (85.9 bits)
H2B1B_MOUSE / Q64475 Histone H2B type 1-B; H2B-clustered histone 3; h2B-143 from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.9 bits)
H2B1A_MOUSE / P70696 Histone H2B type 1-A; Histone H2B, testis; Testis-specific histone H2B from Mus musculus (Mouse) (see 4 papers)
75% identity, 100% coverage of query (85.9 bits)
H2B3_CHLRE / P54346 Histone H2B.3; H2B-III from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 2 papers)
78% identity, 96% coverage of query (85.5 bits)
H2B4_CHLRE / P54347 Histone H2B.4; H2B-IV from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 2 papers)
78% identity, 96% coverage of query (85.5 bits)
H2B1K_MOUSE / Q8CGP1 Histone H2B type 1-K from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.5 bits)
H2B3_SOLLC / O65819 Histone H2B.3; LeH2B-3 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
76% identity, 98% coverage of query (85.5 bits)
H2B6_ARATH / O23629 Histone H2B.6; H2BAt; HTB9 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
76% identity, 98% coverage of query (85.5 bits)
7ybfA / P04910,P04913 Crystal structure of inner membrane protein sad1 in complex with histone h2a-h2b (see paper)
83% identity, 92% coverage of query (85.5 bits)
3x1tD Crystal structure of nucleosome core particle consisting of mouse testis specific histone variants h2aa and h2ba
75% identity, 100% coverage of query (85.5 bits)
H2B_PENVA / P83863 Histone H2B from Penaeus vannamei (Whiteleg shrimp) (Litopenaeus vannamei) (see 2 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B_DROME / P02283 Histone H2B from Drosophila melanogaster (Fruit fly) (see paper)
75% identity, 100% coverage of query (85.1 bits)
H2B3B_MOUSE / Q8CGP0 Histone H2B type 3-B; H2B-clustered histone 26; H2B.U histone 1 from Mus musculus (Mouse) (see 6 papers)
H2B3B_HUMAN / Q8N257 Histone H2B type 3-B; H2B type 12; H2B-clustered histone 26; H2B.U histone 1 from Homo sapiens (Human) (see 5 papers)
73% identity, 100% coverage of query (85.1 bits)
H2B1O_HUMAN / P23527 Histone H2B type 1-O; H2B-clustered histone 17; Histone H2B.2; Histone H2B.n; H2B/n from Homo sapiens (Human) (see 5 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B1H_HUMAN / Q93079 Histone H2B type 1-H; H2B-clustered histone 9; Histone H2B.j; H2B/j from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B1C_HUMAN / P62807 Histone H2B type 1-C/E/F/G/I; Histone H2B.1 A; Histone H2B.a; H2B/a; Histone H2B.g; H2B/g; Histone H2B.h; H2B/h; Histone H2B.k; H2B/k; Histone H2B.l; H2B/l from Homo sapiens (Human) (see 8 papers)
H2B1C_MOUSE / Q6ZWY9 Histone H2B type 1-C/E/G from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B2F_HUMAN / Q5QNW6 Histone H2B type 2-F; H2B-clustered histone 18 from Homo sapiens (Human) (see 4 papers)
H2B2B_MOUSE / Q64525 Histone H2B type 2-B; H2B-clustered histone 18; H2b-616 from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B1H_MOUSE / Q64478 Histone H2B type 1-H; H2B-clustered histone 9; h2B-221 from Mus musculus (Mouse) (see 6 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B2E_HUMAN / Q16778 Histone H2B type 2-E; H2B-clustered histone 21; Histone H2B-GL105; Histone H2B.q; H2B/q from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (85.1 bits)
H2B3A_MOUSE / Q9D2U9 H2B.U histone 2; Histone H2B type 3-A from Mus musculus (Mouse) (see 7 papers)
73% identity, 100% coverage of query (85.1 bits)
H2B7_CHICK / P0C1H5 Histone H2B 7; H2B VII from Gallus gallus (Chicken) (see 4 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B1_ARATH / Q9LQQ4 Histone H2B.1; HTB1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
76% identity, 98% coverage of query (84.7 bits)
H2B1M_MOUSE / P10854 Histone H2B type 1-M; H2B 291B from Mus musculus (Mouse) (see 6 papers)
H2B1D_HUMAN / P58876 Histone H2B type 1-D; H2B-clustered histone 5; HIRA-interacting protein 2; Histone H2B.1 B; Histone H2B.b; H2B/b from Homo sapiens (Human) (see 7 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B1N_HUMAN / Q99877 Histone H2B type 1-N; Histone H2B.d; H2B/d from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B5_CHICK / P0C1H4 Histone H2B 5; H2B V from Gallus gallus (Chicken) (see paper)
75% identity, 100% coverage of query (84.7 bits)
H2B1M_HUMAN / Q99879 Histone H2B type 1-M; Histone H2B.e; H2B/e from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B8_CHICK / Q9PSW9 Histone H2B 8; H2B VIII from Gallus gallus (Chicken) (see paper)
75% identity, 100% coverage of query (84.7 bits)
H2B7_ARATH / Q9LZT0 Histone H2B.7; HTB11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
76% identity, 98% coverage of query (84.7 bits)
H2B1B_HUMAN / P33778 Histone H2B type 1-B; H2B-clustered histone 3; Histone H2B.1; Histone H2B.f; H2B/f from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B1A_RAT / Q00729 Histone H2B type 1-A; Histone H2B, testis; Testis-specific histone H2B from Rattus norvegicus (Rat) (see 3 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B1_CHICK / P0C1H3 Histone H2B 1/2/3/4/6; H2B I; H2B II; H2B III; H2B IV; H2B VI from Gallus gallus (Chicken) (see 2 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B1K_HUMAN / O60814 Histone H2B type 1-K; H2B K; HIRA-interacting protein 1 from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B_ZHASC / Q75VN4 Histone H2B from Zhangixalus schlegelii (Japanese gliding frog) (Rhacophorus schlegelii) (see paper)
75% identity, 100% coverage of query (84.7 bits)
H2B11_XENLA / P02281 Histone H2B 1.1; H2B1.1 from Xenopus laevis (African clawed frog) (see 4 papers)
75% identity, 100% coverage of query (84.7 bits)
H2B12_XENLA / P06900 Histone H2B 1.2; H2B1.2 from Xenopus laevis (African clawed frog) (see paper)
75% identity, 100% coverage of query (84.3 bits)
H2B1J_HUMAN / P06899 Histone H2B type 1-J; Histone H2B.1; Histone H2B.r; H2B/r from Homo sapiens (Human) (see 9 papers)
75% identity, 100% coverage of query (84.3 bits)
7xx7R Crystal structure of nucleosome-h1x linker histone assembly (sticky- 169a DNA fragment)
75% identity, 100% coverage of query (84.3 bits)
7ux9D / O23629 Arabidopsis ddm1 bound to nucleosome (h2a.W, h2b, h3.3, h4, with 147 bp DNA) (see paper)
78% identity, 96% coverage of query (84.3 bits)
H2B1A_HUMAN / Q96A08 Histone H2B type 1-A; Histone H2B, testis; TSH2B.1; hTSH2B; Testis-specific histone H2B from Homo sapiens (Human) (see 6 papers)
75% identity, 100% coverage of query (84.3 bits)
P02286 Histone H2B, gonadal from Asterias rubens (Common European starfish) (Asterias vulgaris)
73% identity, 100% coverage of query (84.3 bits)
1zlaH X-ray structure of a kaposi's sarcoma herpesvirus lana peptide bound to the nucleosomal core
75% identity, 100% coverage of query (84.3 bits)
3mgpD Binding of cobalt ions to the nucleosome core particle
75% identity, 100% coverage of query (84.3 bits)
5dnmH Nucleosome core particle containing adducts of ruthenium(ii)-toluene pta complex
75% identity, 100% coverage of query (84.3 bits)
4j8xH X-ray structure of ncp145 with bound chlorido(eta-6-p-cymene)(n- fluorophenyl-2-pyridinecarbothioamide)ruthenium(ii)
75% identity, 100% coverage of query (84.3 bits)
4j8wD X-ray structure of ncp145 with chlorido(eta-6-p-cymene)(n- fluorophenyl-2-pyridinecarbothioamide)osmium(ii)
75% identity, 100% coverage of query (84.3 bits)
4j8uH X-ray structure of ncp145 with chlorido(eta-6-p-cymene)(n-phenyl-2- pyridinecarbothioamide)osmium(ii)
75% identity, 100% coverage of query (84.3 bits)
3mnnH A ruthenium antitumour agent forms specific histone protein adducts in the nucleosome core
75% identity, 100% coverage of query (84.3 bits)
1f66D 2.6 a crystal structure of a nucleosome core particle containing the variant histone h2a.Z
75% identity, 100% coverage of query (84.3 bits)
6l9zN 338 bp di-nucleosome assembled with linker histone h1.X
75% identity, 100% coverage of query (84.3 bits)
P82887 Histone H2B from Olisthodiscus luteus (Marine phytoflagellate)
78% identity, 96% coverage of query (84.3 bits)
5xf3H Nucleosome core particle with an adduct of a binuclear rapta (ru- arene-phosphaadamantane) compound having a 1,2- diphenylethylenediamine linker (r,r-configuration)
75% identity, 100% coverage of query (84.3 bits)
P30757 Histone H2B from Sipunculus nudus (Sipunculan worm)
73% identity, 100% coverage of query (84.3 bits)
Q7M4G7 Histone H2B from Patiria pectinifera (Starfish) (Asterina pectinifera)
73% identity, 100% coverage of query (84.3 bits)
P05621 Histone H2B.2 from Triticum aestivum (Wheat)
76% identity, 98% coverage of query (84.3 bits)
H2B4_WHEAT / Q43215 Histone H2B.4; H2B153 from Triticum aestivum (Wheat) (see paper)
78% identity, 96% coverage of query (84.0 bits)
H2B10_ARATH / Q9FFC0 Histone H2B.10; HTB2 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
76% identity, 98% coverage of query (84.0 bits)
4nftD / P0C0S5,Q16778 Crystal structure of human lnkh2b-h2a.Z-anp32e (see paper)
75% identity, 98% coverage of query (83.2 bits)
8uq9a / P04908,P61077,Q16778,Q8IYW5 Crystal structure of rnf168 (ring)-ubch5c fused to h2a-h2b via a 4- residue linker (see paper)
75% identity, 98% coverage of query (83.2 bits)
5e5aD Crystal structure of the chromatin-tethering domain of human cytomegalovirus ie1 protein bound to the nucleosome core particle
76% identity, 96% coverage of query (83.2 bits)
P69069 Histone H2B from Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
73% identity, 100% coverage of query (83.2 bits)
H2BFS_HUMAN / P57053 Histone H2B type F-S; H2B-clustered histone 12 like; H2B.S histone 1; Histone H2B.s; H2B/s from Homo sapiens (Human) (see 6 papers)
73% identity, 100% coverage of query (82.8 bits)
1tzyB Crystal structure of the core-histone octamer to 1.90 angstrom resolution
75% identity, 98% coverage of query (82.8 bits)
6t90D Oct4-sox2-bound nucleosome - shl-6
76% identity, 96% coverage of query (82.8 bits)
H2B1_SOLLC / O65821 Histone H2B.1; LeH2B-1 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
74% identity, 96% coverage of query (79.7 bits)
H2B6_WHEAT / Q41575 Histone H2B.6; H2B123 from Triticum aestivum (Wheat) (see paper)
71% identity, 94% coverage of query (79.3 bits)
H2B2_SOLLC / O65818 Histone H2B.2; LeH2B-2 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
73% identity, 98% coverage of query (79.3 bits)
H2BS1_PSAMI / Q27749 Histone H2B.1, sperm from Psammechinus miliaris (Green sea urchin) (Echinus miliaris) (see 2 papers)
62% identity, 100% coverage of query (79.0 bits)
6m2mB A role for histone chaperone oschz1 in histone recognition and deposition
79% identity, 90% coverage of query (79.0 bits)
Q00715 Histone H2B type 1 from Rattus norvegicus (Rat)
74% identity, 90% coverage of query (79.0 bits)
H2BS2_PSAMI / Q27750 Histone H2B.2, sperm from Psammechinus miliaris (Green sea urchin) (Echinus miliaris) (see paper)
69% identity, 100% coverage of query (78.6 bits)
H2B1_TETTS / P08993 Histone H2B.1; H2B-1 from Tetrahymena thermophila (strain SB210) (see 2 papers)
69% identity, 98% coverage of query (78.2 bits)
H2B2_TETTS / P08994 Histone H2B.2; H2B-2 from Tetrahymena thermophila (strain SB210) (see 2 papers)
69% identity, 98% coverage of query (78.2 bits)
Q7M400 Histone H2B from Tetrahymena pyriformis
69% identity, 98% coverage of query (78.2 bits)
H2BS2_LYTPI / P06146 Histone H2B.2, sperm from Lytechinus pictus (Painted sea urchin) (see paper)
65% identity, 100% coverage of query (76.6 bits)
8comD / Q389T1 Structure of the nucleosome core particle from trypanosoma brucei (see paper)
52% identity, 96% coverage of query (60.1 bits)
8jccH / Q7Z2G1 Human histone h2b variant h2bfwt cryo-em structure with 601 DNA sequence (see paper)
51% identity, 94% coverage of query (48.9 bits)
H2BWT_HUMAN / Q7Z2G1 Histone H2B type W-T; H2B histone family member W testis-specific; H2B.W histone 1 from Homo sapiens (Human) (see 3 papers)
51% identity, 94% coverage of query (48.5 bits)
H2B_LILLO / Q9MBF7 Histone H2B.1; GH2B from Lilium longiflorum (Trumpet lily) (see paper)
46% identity, 96% coverage of query (47.8 bits)
7d69D / A8BI78 Cryo-em structure of the nucleosome containing giardia histones (see paper)
37% identity, 98% coverage of query (44.7 bits)
Build an alignment for mRNA_3724 and 91 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory