Sites on a Tree

 

Searching for up to 100 curated homologs for yciG (59 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

Removed hits that are identical to the query, leaving 2

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

YmdF / b4518 stress-induced bacterial acidophilic repeat motifs-containing protein YmdF from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    87% identity, 90% coverage of query (89.7 bits)

RGVIR_PSEAE / Q9I1W9 Putative virulence-regulating protein PA2146 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
    80% identity, 92% coverage of query (80.5 bits)

Build an alignment

Build an alignment for yciG and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory