# Candidate

orgId: FitnessBrowser__Agro
pathwayId: 4-hydroxybenzoate
stepId: pta
locusId: Atu3356
sysName: Atu3356
desc: malic enzyme
curatedIds: curated2:Q9ZKU4
otherIds:
BRENDA::P76558,CharProtDB::CH_003278,SwissProt::P76558,ecocyc::MALIC-NADP-MONOMER,metacyc::MALIC-NADP-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: NAG
stepId: nagB
locusId: Atu1786
sysName: Atu1786
desc: glucosamine-fructose-6-phosphate aminotransferase
curatedIds: reanno::pseudo3_N2E3:AO353_04455
otherIds:
BRENDA::P17169,CharProtDB::CH_003876,SwissProt::P17169,ecocyc::L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER,metacyc::L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: arginine
stepId: astD
locusId: Atu3403
sysName: Atu3403
desc: succinate semialdehyde dehydrogenase
otherIds: BRENDA::Q88RC0
curatedIds:
BRENDA::P76217,CharProtDB::CH_002939,SwissProt::P76217,ecocyc::SUCCGLUALDDEHYD-MONOMER,metacyc::SUCCGLUALDDEHYD-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: arginine
stepId: gabD
locusId: Atu5137
sysName: Atu5137
desc: NAD-dependent succinyl-semialdehyde dehydrogenase
otherIds: SwissProt::P0DOV9
curatedIds:
BRENDA::P25526,CharProtDB::CH_003374,SwissProt::P25526,ecocyc::SUCCSEMIALDDEHYDROG-MONOMER,metacyc::SUCCSEMIALDDEHYDROG-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: cellobiose
stepId: eda
locusId: Atu0703
sysName: Atu0703
desc: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
otherIds: SwissProt::Q92RN8
curatedIds:
SwissProt::Q6BF16,BRENDA::Q6BF16,CharProtDB::CH_024651,ecocyc::DEHYDDEOXPHOSGALACT-ALDOL-MONOMER,metacyc::DEHYDDEOXPHOSGALACT-ALDOL-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: cellobiose
stepId: edd
locusId: Atu0598
sysName: Atu0598
desc: phosphogluconate dehydratase
hmmId: TIGR01196
hmmDesc: edd: phosphogluconate dehydratase (EC 4.2.1.12)
otherIds: SwissProt::P0DOV7
curatedIds:
CharProtDB::CH_024239,SwissProt::P0ADF6,ecocyc::PGLUCONDEHYDRAT-MONOMER,metacyc::PGLUCONDEHYDRAT-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: cellobiose
stepId: pgmA
locusId: Atu3709
sysName: Atu3709
desc: phosphoglucosamine mutase
curatedIds: metacyc::MONOMER-13382
otherIds:
CharProtDB::CH_003592,SwissProt::P31120,ecocyc::PHOSGLUCOSAMINEMUT-MONOMER,metacyc::PHOSGLUCOSAMINEMUT-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: deoxyinosine
stepId: deoC
locusId: Atu0132
sysName: Atu0132
desc: 2-deoxyribose-5-phosphate aldolase
hmmId: TIGR00126
hmmDesc: deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4)
curatedIds:
BRENDA::P0A6L0,CharProtDB::CH_024591,SwissProt::P0A6L0,ecocyc::DEOXYRIBOSE-P-ALD-MONOMER,metacyc::DEOXYRIBOSE-P-ALD-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: deoxyribonate
stepId: aacS
locusId: Atu0405
sysName: Atu0405
desc: long-chain-fatty-acid-CoA-ligase
curatedIds: reanno::acidovorax_3H11:Ac3H11_3009
otherIds:
CharProtDB::CH_000804,SwissProt::P69451,TCDB::P69451,ecocyc::ACYLCOASYN-MONOMER,metacyc::ACYLCOASYN-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: galactose
stepId: dgoA
locusId: Atu4494
sysName: Atu4494
desc: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
otherIds: BRENDA::Q0K1X1
curatedIds:
BRENDA::P0A955,CharProtDB::CH_088603,SwissProt::P0A955,ecocyc::KDPGALDOL-4OH2OXOGLUTARALDOL-MONOMER,metacyc::KDPGALDOL-4OH2OXOGLUTARALDOL-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: glucosamine
stepId: glucosaminate-lyase
locusId: Atu2185
sysName: Atu2185
desc: thioredoxin reductase
curatedIds: curated2:Q93HX6
otherIds:
CharProtDB::CH_024124,SwissProt::P0A9P4,ecocyc::THIOREDOXIN-REDUCT-NADPH-MONOMER,metacyc::THIOREDOXIN-REDUCT-NADPH-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: glucuronate
stepId: uxuA
locusId: Atu0270
sysName: Atu0270
desc: mandelate racemase / muconate lactonizing enzyme family protein
curatedIds: curated2:C6CBG9
otherIds:
CharProtDB::CH_024133,SwissProt::Q6BF17,ecocyc::GALACTONATE-DEHYDRATASE-MONOMER,metacyc::GALACTONATE-DEHYDRATASE-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: isoleucine
stepId: acn
locusId: Atu4734
sysName: Atu4734
desc: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
curatedIds:
BRENDA::P36683,CharProtDB::CH_002191,SwissProt::P36683,ecocyc::ACONITATEDEHYDRB-MONOMER,metacyc::ACONITATEDEHYDRB-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: isoleucine
stepId: prpB
locusId: Atu0607
sysName: Atu0607
desc: isocitrate lyase
curatedIds:
BRENDA::P9WKK7,SwissProt::H8EVV4,SwissProt::P0A5H4,SwissProt::P9WKK6,SwissProt::P9WKK7,metacyc::G185E-4594-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: leucine
stepId: ilvE
locusId: Atu0871
sysName: Atu0871
desc: branched-chain-amino-acid aminotransferase
curatedIds:
BRENDA::P0AB80,CharProtDB::CH_024500,ecocyc::BRANCHED-CHAINAMINOTRANSFER-MONOMER,metacyc::BRANCHED-CHAINAMINOTRANSFER-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: maltose
stepId: malG
locusId: Atu2507
sysName: Atu2507
desc: ABC transporter, membrane spanning protein (sugar)
otherIds: TCDB::G4FGN6
curatedIds:
BRENDA::P68183,CharProtDB::CH_088294,SwissProt::P68183,TCDB::P68183,ecocyc::MALG-MONOMER,metacyc::MALG-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: maltose
stepId: malK
locusId: Atu3148
sysName: Atu3148
desc: sugar ABC transporter ATPase
otherIds: TCDB::Q01937
curatedIds:
BRENDA::P68187,CharProtDB::CH_024750,SwissProt::P68187,TCDB::P68187,ecocyc::MALK-MONOMER,metacyc::MALK-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: threonine
stepId: gloB
locusId: Atu1476
sysName: Atu1476
desc: esterase D
otherIds: SwissProt::P10768
curatedIds:
BRENDA::P33018,CharProtDB::CH_024314,SwissProt::P33018,ecocyc::EG12026-MONOMER,metacyc::EG12026-MONOMER


orgId: FitnessBrowser__Agro
pathwayId: threonine
stepId: kbl
locusId: Atu3998
sysName: Atu3998
desc: 8-amino-7-oxononanoate synthase
otherIds: SwissProt::P22806,metacyc::MONOMER-14018
curatedIds:
BRENDA::P0AB77,CharProtDB::CH_088327,SwissProt::P0AB77,ecocyc::AKBLIG-MONOMER,metacyc::AKBLIG-MONOMER


# RuleScore

orgId: FitnessBrowser__Agro
pathwayId: valine
ruleId: all
path: valine-transport BKD acdH ech bch mmsB mmsA propionyl-CoA-degradation
expandedPath:
livF livG livJ livH livM bkdA bkdB bkdC lpd acdH ech bch mmsB mmsA pccA pccB epi mcm-large mcm-small


