# Candidate

orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: 4-hydroxybenzoate
stepId: adh
locusId: GFF1970
desc: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
otherIds: reanno::pseudo13_GW456_L13:PfGW456L13_1974
curatedIds:
BRENDA::P76217,CharProtDB::CH_002939,SwissProt::P76217,ecocyc::SUCCGLUALDDEHYD-MONOMER,metacyc::SUCCGLUALDDEHYD-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: 4-hydroxybenzoate
stepId: ech
locusId: GFF1566
curatedIds: BRENDA::A4YDS4,metacyc::MONOMER-13738
otherIds: metacyc::MONOMER-20678
desc:
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: 4-hydroxybenzoate
stepId: fadB
locusId: GFF4668
curatedIds: BRENDA::Q0KEG0
desc:
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: 4-hydroxybenzoate
stepId: gcdH
locusId: GFF2789
curatedIds: metacyc::G1G01-166-MONOMER
otherIds: reanno::acidovorax_3H11:Ac3H11_2991
desc:
Isovaleryl-CoA dehydrogenase (EC 1.3.8.4); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: 4-hydroxybenzoate
stepId: pimD
locusId: GFF5445
curatedIds: metacyc::MONOMER-20676
otherIds: SwissProt::P95280
desc:
Putative acyl-CoA dehydrogenase oxidoreductase (EC 1.3.99.3), may be related to NAD-dependent histone acetylation


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: 4-hydroxybenzoate
stepId: pta
locusId: GFF95
desc: NADP-dependent malic enzyme (EC 1.1.1.40)
curatedIds: SwissProt::P77844
otherIds:
BRENDA::P76558,CharProtDB::CH_003278,SwissProt::P76558,ecocyc::MALIC-NADP-MONOMER,metacyc::MALIC-NADP-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: D-serine
stepId: dsdA
locusId: GFF3782
curatedIds: SwissProt::Q7XSN8,BRENDA::Q7XSN8
otherIds: BRENDA::Q2V0H1
desc:
Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: NAG
stepId: crr
locusId: GFF4573
curatedIds: uniprot:Q9KZP2
otherIds: reanno::BFirm:BPHYT_RS02740
desc:
PTS system, glucose-specific IIA component (EC 2.7.1.69) / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: NAG
stepId: nagB
locusId: GFF2435
desc: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
curatedIds: reanno::Korea:Ga0059261_1644
otherIds:
BRENDA::P17169,CharProtDB::CH_003876,SwissProt::P17169,ecocyc::L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER,metacyc::L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: NAG
stepId: nagEIIA
locusId: GFF4574
curatedIds: SwissProt::P39816,TCDB::P39816
otherIds: reanno::BFirm:BPHYT_RS02745
desc:
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: arabinose
stepId: gyaR
locusId: GFF596
curatedIds: SwissProt::Q9C4M5,BRENDA::Q9C4M5
otherIds: reanno::BFirm:BPHYT_RS11290
desc:
Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: arginine
stepId: adiA
locusId: GFF5091
curatedIds: BRENDA::E8X9U7
otherIds: SwissProt::Q9I2S7
desc:
Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: arginine
stepId: aruH
locusId: GFF4235
curatedIds: BRENDA::Q9HUI9,SwissProt::Q9HUI9
otherIds: BRENDA::P77806,CharProtDB::CH_024145,SwissProt::P77806,ecocyc::G6329-MONOMER,metacyc::G6329-MONOMER
desc:
Aspartate aminotransferase (EC 2.6.1.1) / Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: arginine
stepId: gabD
locusId: GFF2629
desc: Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
otherIds: SwissProt::P0DOV9
curatedIds:
BRENDA::P25526,CharProtDB::CH_003374,SwissProt::P25526,ecocyc::SUCCSEMIALDDEHYDROG-MONOMER,metacyc::SUCCSEMIALDDEHYDROG-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: arginine
stepId: gabD
locusId: GFF1990
curatedIds: CharProtDB::CH_024181,SwissProt::P76149,ecocyc::G6811-MONOMER,metacyc::G6811-MONOMER
desc:
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: arginine
stepId: put1
locusId: GFF6107
curatedIds: reanno::Cup4G11:RR42_RS20125
desc:
Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: cellobiose
stepId: eda
locusId: GFF124
curatedIds: BRENDA::Q0K1X1
desc:
4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: cellobiose
stepId: eda
locusId: GFF80
desc: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)
otherIds: SwissProt::Q92RN8
curatedIds:
SwissProt::Q6BF16,BRENDA::Q6BF16,CharProtDB::CH_024651,ecocyc::DEHYDDEOXPHOSGALACT-ALDOL-MONOMER,metacyc::DEHYDDEOXPHOSGALACT-ALDOL-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: cellobiose
stepId: pgmA
locusId: GFF667
desc: Phosphoglucosamine mutase (EC 5.4.2.10)
curatedIds: SwissProt::Q68BJ6
otherIds:
CharProtDB::CH_003592,SwissProt::P31120,ecocyc::PHOSGLUCOSAMINEMUT-MONOMER,metacyc::PHOSGLUCOSAMINEMUT-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: cellobiose
stepId: ptsG
locusId: GFF4574
otherIds: reanno::BFirm:BPHYT_RS02745
curatedIds:
BRENDA::P69786,CharProtDB::CH_024290,SwissProt::P69786,TCDB::P69786,ecocyc::PTSG-MONOMER,metacyc::PTSG-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: citrate
stepId: icd
locusId: GFF3631
curatedIds: SwissProt::P16100,metacyc::MONOMER-13167
hmmId: TIGR00178
hmmDesc: isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42)
desc:
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: citrate
stepId: icd
locusId: GFF3238
curatedIds: BRENDA::Q5SIJ1,BRENDA::Q72IW9,SwissProt::Q5SIJ1,SwissProt::Q72IW9,metacyc::MONOMER-6726
otherIds: BRENDA::P76251,CharProtDB::CH_008421,SwissProt::P76251,ecocyc::G6986-MONOMER,metacyc::G6986-MONOMER
desc:
Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: citrate
stepId: icd
locusId: GFF3106
curatedIds: BRENDA::Q5SIJ1,BRENDA::Q72IW9,SwissProt::Q5SIJ1,SwissProt::Q72IW9,metacyc::MONOMER-6726
otherIds: BRENDA::P76251,CharProtDB::CH_008421,SwissProt::P76251,ecocyc::G6986-MONOMER,metacyc::G6986-MONOMER
desc:
Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: deoxyribonate
stepId: aacS
locusId: GFF4
desc: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
curatedIds: reanno::acidovorax_3H11:Ac3H11_3009
otherIds:
CharProtDB::CH_000804,SwissProt::P69451,TCDB::P69451,ecocyc::ACYLCOASYN-MONOMER,metacyc::ACYLCOASYN-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: fructose
stepId: fruA
locusId: GFF3867
curatedIds: uniprot:G8B0J2
otherIds: TCDB::P71012
desc:
PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: fructose
stepId: tpi
locusId: GFF5424
desc: Triosephosphate isomerase (EC 5.3.1.1)
hmmId: TIGR00419
hmmDesc: tpiA: triose-phosphate isomerase (EC 5.3.1.1)
curatedIds:
BRENDA::P0A858,CharProtDB::CH_024675,SwissProt::B1XB85,SwissProt::P0A858,ecocyc::TPI-MONOMER,metacyc::TPI-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: fucose
stepId: KDF-hydrolase
locusId: GFF3030
curatedIds: metacyc::MONOMER-16233
otherIds: metacyc::MONOMER-604
desc:
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: fucose
stepId: fucA
locusId: GFF4198
desc: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
otherIds: SwissProt::Q2RXI1
curatedIds:
BRENDA::P0AB87,CharProtDB::CH_024678,SwissProt::P0AB87,ecocyc::FUCPALDOL-MONOMER,metacyc::FUCPALDOL-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: galactose
stepId: gatY
locusId: GFF2751
desc: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
otherIds: BRENDA::Q602L6
curatedIds:
CharProtDB::CH_024465,SwissProt::P0AB74,ecocyc::TAGAALDOL1-MONOMER,metacyc::MONOMER-18279,metacyc::TAGAALDOL1-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: glucosamine
stepId: glucosaminate-lyase
locusId: GFF5105
desc: Thioredoxin reductase (EC 1.8.1.9)
curatedIds: curated2:Q93HX6
otherIds:
CharProtDB::CH_024124,SwissProt::P0A9P4,ecocyc::THIOREDOXIN-REDUCT-NADPH-MONOMER,metacyc::THIOREDOXIN-REDUCT-NADPH-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: glutamate
stepId: gdhA
locusId: GFF130
curatedIds: BRENDA::P27346,CharProtDB::CH_015452
otherIds: BRENDA::Q977X9
desc:
NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: glycerol
stepId: dhaK
locusId: GFF4871
curatedIds: BRENDA::P76015,CharProtDB::CH_088626,SwissProt::P76015,ecocyc::G6627-MONOMER,metacyc::G6627-MONOMER
otherIds: BRENDA::Q3LXA3,SwissProt::Q3LXA3
desc:
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: histidine
stepId: Ac3H11_2560
locusId: GFF5534
curatedIds: reanno::acidovorax_3H11:Ac3H11_2560
otherIds: SwissProt::P97027
desc:
Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: isoleucine
stepId: bkdC
locusId: GFF1240
curatedIds: curated2:P37942
otherIds: BRENDA::P20708
desc:
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: isoleucine
stepId: mcm-small
locusId: GFF4482
desc: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
curatedIds: BRENDA::A4YIE3
otherIds:
BRENDA::P13009,CharProtDB::CH_090726,SwissProt::P13009,ecocyc::HOMOCYSMETB12-MONOMER,metacyc::HOMOCYSMETB12-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: isoleucine
stepId: prpB
locusId: GFF1151
desc: Isocitrate lyase (EC 4.1.3.1)
curatedIds:
BRENDA::P9WKK7,SwissProt::H8EVV4,SwissProt::P0A5H4,SwissProt::P9WKK6,SwissProt::P9WKK7,metacyc::G185E-4594-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: isoleucine
stepId: prpB
locusId: GFF3156
curatedIds: SwissProt::P54528,BRENDA::P54528
otherIds: SwissProt::P56839,metacyc::MONOMER-16744
desc:
Phosphoenolpyruvate phosphomutase (EC 5.4.2.9) / Domain similar to phosphocholine cytidylyltransferases


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: leucine
stepId: ilvE
locusId: GFF5227
curatedIds: reanno::acidovorax_3H11:Ac3H11_1358
otherIds: metacyc::MONOMER-6727
desc:
Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: leucine
stepId: ilvE
locusId: GFF6647
curatedIds: CharProtDB::CH_004054,SwissProt::P04693,ecocyc::TYRB-MONOMER,metacyc::TYRB-MONOMER
otherIds: reanno::Cup4G11:RR42_RS33490
desc:
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: maltose
stepId: malG
locusId: GFF3569
desc: Sugar ABC transporter, permease protein
otherIds: TCDB::P77716
curatedIds:
BRENDA::P68183,CharProtDB::CH_088294,SwissProt::P68183,TCDB::P68183,ecocyc::MALG-MONOMER,metacyc::MALG-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: mannitol
stepId: manA
locusId: GFF1534
curatedIds: BRENDA::P07874,SwissProt::P07874,metacyc::MONOMER-13384
otherIds: BRENDA::B4EMQ6
desc:
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22); Mannose-6-phosphate isomerase (EC 5.3.1.8)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: phenylalanine
stepId: QDPR
locusId: GFF3723
curatedIds: CharProtDB::CH_003330,SwissProt::P24232,ecocyc::EG10456-MONOMER,metacyc::EG10456-MONOMER
otherIds: SwissProt::P39662,CharProtDB::CH_018270
desc:
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: serine
stepId: sdaB
locusId: GFF6104
curatedIds: reanno::BFirm:BPHYT_RS19340
hmmId: TIGR00720
hmmDesc: L-serine ammonia-lyase (EC 4.3.1.17)
desc:
L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: threonine
stepId: gloB
locusId: GFF238
desc: S-formylglutathione hydrolase (EC 3.1.2.12)
otherIds: SwissProt::P10768
curatedIds:
BRENDA::P33018,CharProtDB::CH_024314,SwissProt::P33018,ecocyc::EG12026-MONOMER,metacyc::EG12026-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: threonine
stepId: kbl
locusId: GFF3404
desc: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
hmmId: TIGR01822
hmmDesc: kbl: glycine C-acetyltransferase (EC 2.3.1.29)
curatedIds:
BRENDA::P0AB77,CharProtDB::CH_088327,SwissProt::P0AB77,ecocyc::AKBLIG-MONOMER,metacyc::AKBLIG-MONOMER


orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: trehalose
stepId: treF
locusId: GFF2335
desc: Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28)
curatedIds:
BRENDA::P13482,CAZy::AAC74281.1,SwissProt::P13482,ecocyc::TREHALAPERI-MONOMER,metacyc::TREHALAPERI-MONOMER


# RuleScore

orgId: FitnessBrowser__Burkholderia_OAS925
pathwayId: deoxyribose
ruleId: all
path: deoxyribose-dehyd deoxyribonate-transport deoxyribonate-degradation
path2: deoxyribose-transport deoK deoC acetaldehyde-degradation
expandedPath:
drdehyd-alpha drdehyd-beta drdehyd-cytc deoxyribonate-transport deoxyribonate-dehyd ketodeoxyribonate-cleavage garK atoA atoD atoB


