# Candidate

orgId: FitnessBrowser__Phaga5
pathwayId: 4-hydroxybenzoate
stepId: ech
locusId: GFF2109
curatedIds: BRENDA::A4YDS4,metacyc::MONOMER-13738
otherIds: metacyc::MONOMER-20678
desc:
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)


orgId: FitnessBrowser__Phaga5
pathwayId: 4-hydroxybenzoate
stepId: fadB
locusId: GFF414
curatedIds: BRENDA::Q0KEG0
desc:
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)


orgId: FitnessBrowser__Phaga5
pathwayId: 4-hydroxybenzoate
stepId: pimF
locusId: GFF875
curatedIds: metacyc::MONOMER-20678
otherIds: CharProtDB::CH_003230,SwissProt::P77399,ecocyc::G7212-MONOMER,metacyc::G7212-MONOMER
desc:
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)


orgId: FitnessBrowser__Phaga5
pathwayId: 4-hydroxybenzoate
stepId: pta
locusId: GFF2469
desc: NADP-dependent malic enzyme (EC 1.1.1.40)
curatedIds: SwissProt::P77844
otherIds:
BRENDA::P76558,CharProtDB::CH_003278,SwissProt::P76558,ecocyc::MALIC-NADP-MONOMER,metacyc::MALIC-NADP-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: L-lactate
stepId: L-LDH
locusId: GFF2105
desc: L-lactate dehydrogenase (EC 1.1.2.3)
otherIds: SwissProt::O52792
curatedIds:
CharProtDB::CH_000618,SwissProt::P33232,ecocyc::L-LACTDEHYDROGFMN-MONOMER,metacyc::L-LACTDEHYDROGFMN-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: NAG
stepId: nagB
locusId: GFF1597
desc: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
curatedIds: reanno::Korea:Ga0059261_1644
otherIds:
BRENDA::P17169,CharProtDB::CH_003876,SwissProt::P17169,ecocyc::L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER,metacyc::L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: arabinose
stepId: gyaR
locusId: GFF3835
curatedIds: SwissProt::Q9C4M5,BRENDA::Q9C4M5
otherIds: reanno::BFirm:BPHYT_RS11290
desc:
Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)


orgId: FitnessBrowser__Phaga5
pathwayId: arabinose
stepId: xacF
locusId: GFF1556
desc: Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
curatedIds: SwissProt::Q1JUP4,BRENDA::Q1JUP4
otherIds:
BRENDA::P25526,CharProtDB::CH_003374,SwissProt::P25526,ecocyc::SUCCSEMIALDDEHYDROG-MONOMER,metacyc::SUCCSEMIALDDEHYDROG-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: arginine
stepId: adiA
locusId: GFF4333
curatedIds: BRENDA::E8X9U7
otherIds: SwissProt::Q9I2S7
desc:
Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18)


orgId: FitnessBrowser__Phaga5
pathwayId: arginine
stepId: astD
locusId: GFF2726
curatedIds: curated2:Q2G9T9
otherIds: reanno::azobra:AZOBR_RS23695
desc:
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)


orgId: FitnessBrowser__Phaga5
pathwayId: asparagine
stepId: ans
locusId: GFF1173
desc: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
otherIds: SwissProt::P49078
curatedIds:
BRENDA::P22106,CharProtDB::CH_002444,SwissProt::P22106,ecocyc::ASNSYNB-MONOMER,metacyc::ASNSYNB-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: cellobiose
stepId: eda
locusId: GFF5496
curatedIds: metacyc::MONOMER-15645
desc:
4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)


orgId: FitnessBrowser__Phaga5
pathwayId: cellobiose
stepId: pgmA
locusId: GFF4219
desc: Phosphoglucosamine mutase (EC 5.4.2.10)
curatedIds: metacyc::MONOMER-13382
otherIds:
CharProtDB::CH_003592,SwissProt::P31120,ecocyc::PHOSGLUCOSAMINEMUT-MONOMER,metacyc::PHOSGLUCOSAMINEMUT-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: citrate
stepId: icd
locusId: GFF4513
curatedIds: BRENDA::O53611
hmmId: TIGR00178
hmmDesc: isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42)
desc:
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)


orgId: FitnessBrowser__Phaga5
pathwayId: citrate
stepId: icd
locusId: GFF3852
curatedIds: BRENDA::Q5SIJ1,BRENDA::Q72IW9,SwissProt::Q5SIJ1,SwissProt::Q72IW9,metacyc::MONOMER-6726
otherIds: BRENDA::P76251,CharProtDB::CH_008421,SwissProt::P76251,ecocyc::G6986-MONOMER,metacyc::G6986-MONOMER
desc:
Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83)


orgId: FitnessBrowser__Phaga5
pathwayId: deoxyribonate
stepId: aacS
locusId: GFF2607
desc: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
curatedIds: reanno::acidovorax_3H11:Ac3H11_3009
otherIds:
CharProtDB::CH_000804,SwissProt::P69451,TCDB::P69451,ecocyc::ACYLCOASYN-MONOMER,metacyc::ACYLCOASYN-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: fructose
stepId: tpi
locusId: GFF3679
desc: Triosephosphate isomerase (EC 5.3.1.1)
hmmId: TIGR00419
hmmDesc: tpiA: triose-phosphate isomerase (EC 5.3.1.1)
curatedIds:
BRENDA::P0A858,CharProtDB::CH_024675,SwissProt::B1XB85,SwissProt::P0A858,ecocyc::TPI-MONOMER,metacyc::TPI-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: glucosamine
stepId: glucosaminate-lyase
locusId: GFF773
desc: Thioredoxin reductase (EC 1.8.1.9)
curatedIds: curated2:Q93HX6
otherIds:
CharProtDB::CH_024124,SwissProt::P0A9P4,ecocyc::THIOREDOXIN-REDUCT-NADPH-MONOMER,metacyc::THIOREDOXIN-REDUCT-NADPH-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: glucuronate
stepId: gudD
locusId: GFF1499
desc: Glucarate dehydratase (EC 4.2.1.40)
hmmId: TIGR03247
hmmDesc: gudD: glucarate dehydratase (EC 4.2.1.40)
otherIds: CharProtDB::CH_017478,SwissProt::Q46915,ecocyc::G7446-MONOMER
curatedIds:
CharProtDB::CH_024866,SwissProt::P0AES2,ecocyc::GLUCARDEHYDRA-MONOMER,metacyc::GLUCARDEHYDRA-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: glutamate
stepId: gdhA
locusId: GFF3698
curatedIds: SwissProt::P50735
otherIds: BRENDA::Q977X9
desc:
NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4)


orgId: FitnessBrowser__Phaga5
pathwayId: histidine
stepId: Ac3H11_2560
locusId: GFF22
curatedIds: reanno::acidovorax_3H11:Ac3H11_2560
otherIds: TCDB::O05347
desc:
Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB


orgId: FitnessBrowser__Phaga5
pathwayId: isoleucine
stepId: bkdC
locusId: GFF4876
curatedIds: curated2:P37942
otherIds: BRENDA::P20708
desc:
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)


orgId: FitnessBrowser__Phaga5
pathwayId: isoleucine
stepId: prpB
locusId: GFF4147
desc: Isocitrate lyase (EC 4.1.3.1)
curatedIds:
BRENDA::P9WKK7,SwissProt::H8EVV4,SwissProt::P0A5H4,SwissProt::P9WKK6,SwissProt::P9WKK7,metacyc::G185E-4594-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: leucine
stepId: ilvE
locusId: GFF4777
curatedIds: CharProtDB::CH_004054,SwissProt::P04693,ecocyc::TYRB-MONOMER,metacyc::TYRB-MONOMER
otherIds: reanno::Cup4G11:RR42_RS33490
desc:
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1)


orgId: FitnessBrowser__Phaga5
pathwayId: maltose
stepId: malK
locusId: GFF4371
desc: ABC transporter related
otherIds: BRENDA::Q70HW1
curatedIds:
BRENDA::P68187,CharProtDB::CH_024750,SwissProt::P68187,TCDB::P68187,ecocyc::MALK-MONOMER,metacyc::MALK-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: phenylacetate
stepId: padC
locusId: GFF1192
curatedIds: uniprot:A0A2R4BLY8
otherIds: BRENDA::Q84FZ7
desc:
Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)


orgId: FitnessBrowser__Phaga5
pathwayId: phenylalanine
stepId: ARO8
locusId: GFF1835
desc: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
otherIds: reanno::BFirm:BPHYT_RS16285
curatedIds:
BRENDA::P0AB80,CharProtDB::CH_024500,ecocyc::BRANCHED-CHAINAMINOTRANSFER-MONOMER,metacyc::BRANCHED-CHAINAMINOTRANSFER-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: phenylalanine
stepId: QDPR
locusId: GFF5814
curatedIds: CharProtDB::CH_003330,SwissProt::P24232,ecocyc::EG10456-MONOMER,metacyc::EG10456-MONOMER
otherIds: SwissProt::P39662,CharProtDB::CH_018270
desc:
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)


orgId: FitnessBrowser__Phaga5
pathwayId: threonine
stepId: gloA
locusId: GFF3511
desc: Lactoylglutathione lyase (EC 4.4.1.5)
hmmId: TIGR00068
hmmDesc: gloA: lactoylglutathione lyase (EC 4.4.1.5)
curatedIds:
BRENDA::P0AC81,CharProtDB::CH_014266,SwissProt::P0AC81,ecocyc::GLYOXI-MONOMER,metacyc::GLYOXI-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: threonine
stepId: gloB
locusId: GFF3319
desc: S-formylglutathione hydrolase (EC 3.1.2.12)
otherIds: SwissProt::Q9GJT2
curatedIds:
BRENDA::P33018,CharProtDB::CH_024314,SwissProt::P33018,ecocyc::EG12026-MONOMER,metacyc::EG12026-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: threonine
stepId: kbl
locusId: GFF3995
desc: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
otherIds: BRENDA::P12998,SwissProt::P12998,ecocyc::7KAPSYN-MONOMER,metacyc::7KAPSYN-MONOMER
curatedIds:
BRENDA::P0AB77,CharProtDB::CH_088327,SwissProt::P0AB77,ecocyc::AKBLIG-MONOMER,metacyc::AKBLIG-MONOMER


orgId: FitnessBrowser__Phaga5
pathwayId: threonine
stepId: yvgN
locusId: GFF2877
curatedIds: SwissProt::O32210,metacyc::BSU33400-MONOMER
otherIds: CharProtDB::CH_024772,ecocyc::MONOMER0-149,metacyc::MONOMER0-149
desc:
Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274)


# RuleScore

orgId: FitnessBrowser__Phaga5
pathwayId: deoxyribose
ruleId: all
path: deoxyribose-dehyd deoxyribonate-transport deoxyribonate-degradation
path2: deoxyribose-transport deoK deoC acetaldehyde-degradation
expandedPath:
drdehyd-alpha drdehyd-beta drdehyd-cytc deoxyribonate-transport deoxyribonate-dehyd ketodeoxyribonate-cleavage garK atoA atoD atoB


