Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 1 curated entries in PaperBLAST's database that match 'cystathionine-gamma-lyase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2080: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

48% id,
89% cov

Echvi_1734: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

41% id,
88% cov

Echvi_4510: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

38% id,
89% cov

Echvi_2283: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

33% id,
90% cov

Echvi_3411: OAH/OAS sulfhydrylase
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

35% id,
39% cov

Echvi_4167: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea

26% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2453364-2454533 (frame +3) on Echvi_Contig97.1
is similar to:
PaperBLAST

CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea
Also see hits to annotated proteins above

47% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory