Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 33 curated entries in PaperBLAST's database that match '1.5.1.2' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2645: pyrroline-5-carboxylate reductase (RefSeq)
is similar to:
PaperBLAST

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

43% id,
98% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

38% id,
97% cov

PROC1 / F2E7Q2: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Hordeum vulgare

38% id,
95% cov

More...

Dshi_2945: Prephenate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

P5CR3_HUMAN / Q53H96: Pyrroline-5-carboxylate reductase 3; P5C reductase 3; P5CR 3; Pyrroline-5-carboxylate reductase-like protein; EC 1.5.1.2 from Homo sapiens

25% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory