Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0888: Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq)
is similar to:
PaperBLAST

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

47% id,
99% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

49% id,
94% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

46% id,
97% cov

More...

Dshi_1439: pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family (RefSeq)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

37% id,
97% cov

Dshi_2702: Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq)
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

36% id,
98% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

36% id,
94% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

34% id,
97% cov

More...

Dshi_2109: alanine racemase domain protein (RefSeq)
is similar to:
PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Gallus gallus

36% id,
98% cov

DSD1_DICDI / Q54XE5: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Dictyostelium discoideum

29% id,
94% cov

Dshi_3473: threonine dehydratase (RefSeq)
is similar to:
PaperBLAST

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

30% id,
92% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

29% id,
94% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

28% id,
95% cov

More...

Dshi_0889: alanine racemase domain protein (RefSeq)
is similar to:
PaperBLAST

DSD1_DICDI / Q54XE5: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Dictyostelium discoideum

25% id,
94% cov

Dshi_2314: Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

26% id,
61% cov

PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

26% id,
22% cov

Q4A041: D-Serine ammonia-lyase (EC 4.3.1.18) from Staphylococcus saprophyticus

24% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory