Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 66 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 52 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_3021: aconitate hydratase (RefSeq)
is similar to:
PaperBLAST

ACON_HUMAN / Q99798: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Homo sapiens
Q99798: aconitate hydratase (EC 4.2.1.3) from Homo sapiens

36% id,
92% cov

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Aspergillus fumigatus

36% id,
91% cov

ACON_BOVIN / P20004: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus

35% id,
92% cov

More...

DvMF_1792: 3-isopropylmalate dehydratase large subunit (RefSeq)
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

31% id,
40% cov

Q9NFX3: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster

25% id,
41% cov

ACOHC_HUMAN / P21399: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Homo sapiens
P21399: aconitate hydratase (EC 4.2.1.3) from Homo sapiens

27% id,
34% cov

More...

DvMF_1793: 3-isopropylmalate dehydratase, small subunit (RefSeq)
is similar to:
PaperBLAST

Q8RP87: aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis

29% id,
17% cov

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

29% id,
17% cov

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens

26% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3812217-3814361 (frame +3) on 254340
is similar to:
PaperBLAST

ACON_BOVIN / P20004: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus
Also see hits to annotated proteins above

35% id,
99% cov

ACON_HUMAN / Q99798: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Homo sapiens
Q99798: aconitate hydratase (EC 4.2.1.3) from Homo sapiens
Also see hits to annotated proteins above

36% id,
93% cov

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Aspergillus fumigatus
Also see hits to annotated proteins above

36% id,
93% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory