Curated BLAST
Searching in Azospirillum brasilense Sp245 (azobra)
Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Azospirillum brasilense Sp245, or try another query
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
1999874-2002654 (frame +2) on NC_016617.1 is similar to: | PaperBLAST |
metH / Q8NQD1: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Corynebacterium glutamicum | 50% id, 79% cov |
PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens Also see hits to annotated proteins above | 31% id, 100% cov |
PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens | 31% id, 91% cov |
METH_RAT / Q9Z2Q4: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Rattus norvegicus Q9Z2Q4: methionine synthase (EC 2.1.1.13) from Rattus norvegicus | 32% id, 76% cov |
METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli metH: methionine synthase; EC 2.1.1.13 from Escherichia coli metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli | 32% id, 76% cov |
METH_HUMAN / Q99707: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens MTR / Q99707: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Homo sapiens Q99707: methionine synthase (EC 2.1.1.13) from Homo sapiens | 32% id, 75% cov |
DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris | 32% id, 72% cov |
DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris | 31% id, 72% cov |
Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima Also see hits to annotated proteins above | 31% id, 71% cov |
More... |
1999120-2000991 (frame +1) on NC_016617.1 is similar to: | PaperBLAST |
DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris | 38% id, 27% cov |
metH / Q8NQD1: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Corynebacterium glutamicum | 50% id, 20% cov |
DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris | 36% id, 27% cov |
Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima Also see hits to annotated proteins above | 33% id, 28% cov |
METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli metH: methionine synthase; EC 2.1.1.13 from Escherichia coli metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli | 33% id, 21% cov |
METH_RAT / Q9Z2Q4: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Rattus norvegicus Q9Z2Q4: methionine synthase (EC 2.1.1.13) from Rattus norvegicus | 34% id, 20% cov |
METH_HUMAN / Q99707: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens MTR / Q99707: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Homo sapiens Q99707: methionine synthase (EC 2.1.1.13) from Homo sapiens | 32% id, 21% cov |
More... |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory