Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 185 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 140 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_835: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
is similar to:
PaperBLAST

AAF71997.1: α-glucosidase (EC 3.2.1.20)

58% id,
99% cov

CAA54266.1: α-glucosidase (EC 3.2.1.20)

49% id,
96% cov

AAA25570.1: α-glucosidase (Agl) (EC 3.2.1.20)

46% id,
99% cov

More...

Pf1N1B4_4677: Trehalose synthase (EC 5.4.99.16)
is similar to:
PaperBLAST

Q9Z3R8: alpha-glucosidase (EC 3.2.1.20) from Sinorhizobium meliloti

34% id,
99% cov

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

33% id,
94% cov

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

33% id,
92% cov

More...

Pf1N1B4_5805: Muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

22% id,
95% cov

Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

25% id,
73% cov

Pf1N1B4_4686: Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)
is similar to:
PaperBLAST

CAB46746.1: α-glucosidase (maltase mal22) (EC 3.2.1.20)

29% id,
22% cov

ABW98683.1: α-glucosidase / binding-toxin receptor (Agm3;AgAgm3) (EC 3.2.1.20)

29% id,
17% cov

Pf1N1B4_4684: Malto-oligosyltrehalose synthase (EC 5.4.99.15)
is similar to:
PaperBLAST

MalZ / b0403: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
malZ / P21517: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
P21517: alpha-glucosidase (EC 3.2.1.20) from Escherichia coli

33% id,
17% cov

AIZ92452.1: α-glucosidase Z (EO53_16270;MalZ;b0403) (EC 3.2.1.20)
BAE76183.1: maltodextrin glucosidase (MalZ) (EC 3.2.1.20)

33% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory