Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Bifidobacterium longum NCC2705 (GCF_000007525.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Bifidobacterium longum NCC2705, or try another query

serA BL_RS00800 BL1313 WP_007054393.1: phosphoglycerate dehydrogenase is similar to:	PaperBLAST
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	50% id, 97% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	49% id, 97% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	50% id, 85% cov
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii	45% id, 90% cov
SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	45% id, 87% cov
SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	45% id, 87% cov
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	53% id, 64% cov
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii	36% id, 95% cov
PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis	32% id, 84% cov
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	30% id, 75% cov
H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori	32% id, 70% cov
serA / GB\|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis	31% id, 69% cov
SERA_MOUSE / Q61753: D-3-phosphoglycerate dehydrogenase; 3-PGDH; A10; EC 1.1.1.95 from Mus musculus Q61753: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mus musculus	36% id, 58% cov
SERA_RAT / O08651: D-3-phosphoglycerate dehydrogenase; 3-PGDH; EC 1.1.1.95 from Rattus norvegicus Phgdh / O08651: 3-phosphoglycerate dehydrogenase subunit (EC 1.1.1.95) from Rattus norvegicus O08651: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Rattus norvegicus	36% id, 58% cov
SERA_HUMAN / O43175: D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens PHGDH / O43175: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens O43175: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens	35% id, 58% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	34% id, 56% cov
A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	28% id, 64% cov
SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	31% id, 57% cov
A0A1Z4EAX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	29% id, 59% cov
SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	28% id, 60% cov
A0A2R6X868: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Marchantia polymorpha	30% id, 53% cov
SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	31% id, 51% cov
More...

BL_RS08230 BL1568 WP_007053022.1: D-2-hydroxyacid dehydrogenase family protein is similar to:	PaperBLAST
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii	29% id, 83% cov
EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica	28% id, 76% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	30% id, 68% cov
O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii	26% id, 74% cov
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	31% id, 61% cov
PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis	24% id, 74% cov
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	25% id, 71% cov
H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori	31% id, 58% cov
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii	29% id, 59% cov
Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis	32% id, 54% cov
SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	32% id, 53% cov
serA / GB\|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis	34% id, 49% cov
SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	32% id, 50% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	25% id, 63% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	31% id, 52% cov
SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	26% id, 61% cov
A0A1Z4EAX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	31% id, 50% cov
A0A2R6X868: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Marchantia polymorpha	30% id, 52% cov
SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	25% id, 61% cov
SERA_RAT / O08651: D-3-phosphoglycerate dehydrogenase; 3-PGDH; EC 1.1.1.95 from Rattus norvegicus Phgdh / O08651: 3-phosphoglycerate dehydrogenase subunit (EC 1.1.1.95) from Rattus norvegicus O08651: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Rattus norvegicus	32% id, 47% cov
SERA_MOUSE / Q61753: D-3-phosphoglycerate dehydrogenase; 3-PGDH; A10; EC 1.1.1.95 from Mus musculus Q61753: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mus musculus	32% id, 47% cov
SERA_HUMAN / O43175: D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens PHGDH / O43175: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens O43175: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens	32% id, 47% cov
SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	31% id, 47% cov
A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	32% id, 45% cov
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	25% id, 45% cov
More...

BL_RS00190 BL0038 WP_164928200.1: D-2-hydroxyacid dehydrogenase is similar to:	PaperBLAST
O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii	29% id, 76% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	28% id, 62% cov
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	28% id, 58% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	29% id, 50% cov
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	29% id, 47% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	27% id, 46% cov
More...

BL_RS01185 BL1382 WP_011068024.1: prephenate dehydrogenase/arogenate dehydrogenase family protein is similar to:	PaperBLAST
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	25% id, 54% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	28% id, 28% cov
O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii	34% id, 19% cov

purK BL_RS04260 BL1129 WP_007051237.1: 5-(carboxyamino)imidazole ribonucleotide synthase is similar to:	PaperBLAST
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii	35% id, 14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory