Curated BLAST for Genomes

 

Curated BLAST

Searching in Cereibacter sphaeroides ATCC 17029 (GCF_000015985.1)

Found 1 curated entries in PaperBLAST's database that match '2.3.1.182' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Cereibacter sphaeroides ATCC 17029, or try another query

cimA RSPH17029_RS06990 Rsph17029_1381 WP_011840981.1: citramalate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

27% id,
99% cov

nifV RSPH17029_RS10985 Rsph17029_2181 WP_011841500.1: homocitrate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

32% id,
74% cov

RSPH17029_RS05125 Rsph17029_1005 WP_002719494.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

30% id,
72% cov

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

50% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory