Curated BLAST for Genomes

 

Curated BLAST

Searching in Agathobacter rectalis ATCC 33656 (GCF_000020605.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Agathobacter rectalis ATCC 33656, or try another query

EUBREC_RS03245 EUBREC_0724 WP_012741626.1: homoserine dehydrogenase
is similar to:
PaperBLAST

D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus

37% id,
97% cov

DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; HSD; EC 1.1.1.3 from Bacillus subtilis
P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis

36% id,
97% cov

DHOM_LACLC / P52985: Homoserine dehydrogenase; HDH; HSD; EC 1.1.1.3 from Lactococcus lactis

36% id,
94% cov

More...

EUBREC_RS12550 EUBREC_2796 WP_012743554.1: aspartate kinase
is similar to:
PaperBLAST

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

30% id,
56% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

29% id,
56% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

29% id,
56% cov

More...

proB EUBREC_RS07365 EUBREC_1648 WP_012742490.1: glutamate 5-kinase
is similar to:
PaperBLAST

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

32% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory