Curated BLAST for Genomes

 

Curated BLAST

Searching in Agathobacter rectalis ATCC 33656 (GCF_000020605.1)

Found 21 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Agathobacter rectalis ATCC 33656, or try another query

dapB EUBREC_RS11420 EUBREC_2534 WP_012743356.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q5HG24: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Staphylococcus aureus

42% id,
98% cov

Q9K1F1: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Neisseria meningitidis

36% id,
97% cov

DvMF_0450: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Desulfovibrio vulgaris

35% id,
99% cov

More...

dapA EUBREC_RS06590 EUBREC_1479 WP_012742332.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

43% id,
97% cov

dapA EUBREC_RS11425 EUBREC_2535 WP_012743357.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

41% id,
100% cov

dapA EUBREC_RS05385 EUBREC_1206 WP_012742066.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

32% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory