Curated BLAST for Genomes

 

Curated BLAST

Searching in Agathobacter rectalis ATCC 33656 (GCF_000020605.1)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Agathobacter rectalis ATCC 33656, or try another query

EUBREC_RS08930 EUBREC_1979 WP_012742818.1: prephenate dehydrogenase/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

Q81P63: prephenate dehydrogenase (EC 1.3.1.12) from Bacillus anthracis

36% id,
95% cov

Q8DUW0: prephenate dehydrogenase (EC 1.3.1.12) from Streptococcus mutans

33% id,
99% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

31% id,
96% cov

More...

EUBREC_RS08820 EUBREC_1954 WP_012742793.1: bifunctional chorismate mutase/prephenate dehydratase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

29% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory