Curated BLAST
Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)
Found 14 curated entries in PaperBLAST's database that match '4.2.3.5' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Trichormus variabilis ATCC 29413, or try another query
aroC AVA_RS02985 Ava_0589 WP_010994971.1: chorismate synthase
is similar to: | PaperBLAST |
AROC_YEAST / P28777: Chorismate synthase ARO2; 5-enolpyruvylshikimate-3-phosphate phospholyase; Aromatic amino acid requiring protein 2; EC 1.5.1.38; EC 4.2.3.5 from Saccharomyces cerevisiae | 57% id,
96% cov |
B5AAU3: chorismate synthase (EC 4.2.3.5) from Hordeum vulgare | 66% id,
82% cov |
AROC_ECOLI / P12008: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 from Escherichia coli
AroC / b2329: chorismate synthase (EC 4.2.3.5) from Escherichia coli
aroC / P12008: chorismate synthase (EC 4.2.3.5) from Escherichia coli | 51% id,
96% cov |
C8Z2I6: chorismate synthase (EC 4.2.3.5) from Verticillium longisporum | 50% id,
96% cov |
AROC_NEUCR / Q12640: Chorismate synthase aro-2; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 1.5.1.38; EC 4.2.3.5 from Neurospora crassa | 50% id,
92% cov |
AROC_HELPY / P56122: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Helicobacter pylori | 44% id,
95% cov |
Q71Y87: chorismate synthase (EC 4.2.3.5) from Listeria monocytogenes | 39% id,
91% cov |
AROC_AQUAE / O66493: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Aquifex aeolicus | 38% id,
93% cov |
AROC_STRPN / P0A2Y6: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Streptococcus pneumoniae | 36% id,
94% cov |
AROC_MYCTU / P9WPY1: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Mycobacterium tuberculosis | 36% id,
93% cov |
AROC_STAAU / Q59803: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Staphylococcus aureus | 35% id,
94% cov |
O15864: chorismate synthase (EC 4.2.3.5) from Plasmodium falciparum | 42% id,
35% cov |
O15864: chorismate synthase (EC 4.2.3.5) from Plasmodium falciparum | 35% id,
31% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory