Curated BLAST
Searching in Trichormus variabilis ATCC 29413 (GCF_000204075.1)
Found 13 curated entries in PaperBLAST's database that match '5.1.1.7' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Trichormus variabilis ATCC 29413, or try another query
dapF AVA_RS15605 Ava_3088 WP_041456242.1: diaminopimelate epimerase is similar to: | PaperBLAST |
DAPF_ARATH / Q9LFG2: Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana Q9LFG2: diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana | 63% id, 78% cov |
DAPF_ECOLI / P0A6K1: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli DapF / b3809: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli dapF / P0A6K1: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli | 41% id, 99% cov |
DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis | 41% id, 96% cov |
DAPF_HAEIN / P44859: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae | 40% id, 99% cov |
DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum | 35% id, 99% cov |
E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae | 36% id, 95% cov |
DAPF_MYCTU / P9WP19: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis P9WP19: diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis | 33% id, 96% cov |
More... |
dapF AVA_RS10685 Ava_2112 WP_011318901.1: diaminopimelate epimerase is similar to: | PaperBLAST |
DAPF_HAEIN / P44859: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae | 35% id, 100% cov |
DAPF_ECOLI / P0A6K1: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli DapF / b3809: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli dapF / P0A6K1: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli | 35% id, 99% cov |
DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis | 33% id, 99% cov |
DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum | 33% id, 98% cov |
DAPF_ARATH / Q9LFG2: Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana Q9LFG2: diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana | 36% id, 78% cov |
E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae | 30% id, 95% cov |
DAPF_MYCTU / P9WP19: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis P9WP19: diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis | 28% id, 98% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory