Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.23' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

hisD ABB28_RS00530 ABB28_00535 WP_057506748.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HISX_ECOLI / P06988: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Escherichia coli
hisD / P06988: histidinal/histidinol dehydrogenase (EC 1.1.1.23) from Escherichia coli

52% id,
98% cov

HISX_SALTY / P10370: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Salmonella typhimurium

51% id,
98% cov

his2 / RF|NP_595886.1: histidinol dehydrogenase His2 (predicted); EC 1.1.1.23 from Schizosaccharomyces pombe

45% id,
96% cov

More...

hisIE ABB28_RS00560 ABB28_00565 WP_057506754.1: bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

33% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory