PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06155 (DUF971)

PF06155.12 hits 29 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

Sama_0429 predicted FeS cluster maintenance protein from Shewanella amazonensis SB2B
Aligns to 9:91 / 126 (65.9%), covers 98.8% of PF06155, 101.9 bits

SO4164 predicted FeS cluster maintenance protein from Shewanella oneidensis MR-1
Aligns to 11:93 / 128 (64.8%), covers 98.8% of PF06155, 100.3 bits

Pf1N1B4_1554 predicted FeS cluster maintenance protein from Pseudomonas fluorescens FW300-N1B4
Aligns to 8:90 / 125 (66.4%), covers 100.0% of PF06155, 90.7 bits

AO353_12420 predicted FeS cluster maintenance protein from Pseudomonas fluorescens FW300-N2E3
Aligns to 9:91 / 126 (65.9%), covers 100.0% of PF06155, 88.7 bits

orf19.4316 potential gamma-butyrobetaine hydroxylase from Candida albicans (see paper)
Aligns to 7:89 / 396 (21.0%), covers 90.6% of PF06155, 62.7 bits

Q9QZU7 gamma-butyrobetaine dioxygenase (EC 1.14.11.1) from Rattus norvegicus (see paper)
Q9QZU7 γ-butyrobetaine hydroxylase subunit (EC 1.14.11.1) from Rattus norvegicus (see paper)
Aligns to 9:92 / 387 (21.7%), covers 91.8% of PF06155, 58.7 bits

BODG_HUMAN / O75936 Gamma-butyrobetaine dioxygenase; Gamma-butyrobetaine hydroxylase; Gamma-BBH; Gamma-butyrobetaine,2-oxoglutarate dioxygenase; EC 1.14.11.1 from Homo sapiens (Human) (see paper)
O75936 gamma-butyrobetaine dioxygenase (EC 1.14.11.1) from Homo sapiens (see paper)
O75936 γ-butyrobetaine dioxygenase (EC 1.14.11.1) from Homo sapiens (see 4 papers)
Aligns to 9:92 / 387 (21.7%), covers 90.6% of PF06155, 57.2 bits

TMLH_RAT / Q91ZW6 Trimethyllysine dioxygenase, mitochondrial; Epsilon-trimethyllysine 2-oxoglutarate dioxygenase; TML hydroxylase; TML-alpha-ketoglutarate dioxygenase; TML dioxygenase; TMLD; EC 1.14.11.8 from Rattus norvegicus (Rat) (see paper)
Q91ZW6 trimethyllysine dioxygenase (EC 1.14.11.8) from Rattus norvegicus (see paper)
Q91ZW6 ε-N-trimethyllysine hydroxylase subunit (EC 1.14.11.8) from Rattus norvegicus (see paper)
Aligns to 44:134 / 421 (21.6%), covers 96.5% of PF06155, 46.9 bits

TMLH_MOUSE / Q91ZE0 Trimethyllysine dioxygenase, mitochondrial; Epsilon-trimethyllysine 2-oxoglutarate dioxygenase; TML hydroxylase; TML-alpha-ketoglutarate dioxygenase; TML dioxygenase; TMLD; EC 1.14.11.8 from Mus musculus (Mouse) (see paper)
Q91ZE0 trimethyllysine dioxygenase (EC 1.14.11.8) from Mus musculus (see 2 papers)
Aligns to 51:134 / 421 (20.0%), covers 96.5% of PF06155, 46.7 bits

TMLH_HUMAN / Q9NVH6 Trimethyllysine dioxygenase, mitochondrial; Epsilon-trimethyllysine 2-oxoglutarate dioxygenase; Epsilon-trimethyllysine hydroxylase; TML hydroxylase; TML-alpha-ketoglutarate dioxygenase; TML dioxygenase; TMLD; EC 1.14.11.8 from Homo sapiens (Human) (see 7 papers)
Q9NVH6 trimethyllysine dioxygenase (EC 1.14.11.8) from Homo sapiens (see paper)
Aligns to 40:134 / 421 (22.6%), covers 95.3% of PF06155, 45.1 bits

CH_124288 gamma-butyrobetaine dioxygenase from Magnaporthe grisea 70-15 (see paper)
Aligns to 182:275 / 573 (16.4%), covers 82.4% of PF06155, 40.4 bits

HF101_ARATH / Q6STH5 Fe-S cluster assembly factor HCF101, chloroplastic; Protein HIGH CHLOROPHYLL FLUORESCENCE 101 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
Aligns to 430:516 / 532 (16.4%), covers 78.8% of PF06155, 37.2 bits

Or search for genetic data about PF06155 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory