PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF11523 (DUF3223)

PF11523.8 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

DCL_SOLLC / Q42463 Protein DCL, chloroplastic; Defective chloroplasts and leaves protein from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see 2 papers)
Aligns to 121:197 / 224 (34.4%), covers 98.7% of PF11523, 99.5 bits

DCL_ARATH / Q9C642 Protein DCL homolog, chloroplastic; AtDCL from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 116:192 / 219 (35.2%), covers 98.7% of PF11523, 95.8 bits

NRPE1_ARATH / Q5D869 DNA-directed RNA polymerase V subunit 1; DNA-directed RNA polymerase D subunit 1b; AtNRPD1b; Nuclear RNA polymerase D 1b; DNA-directed RNA polymerase E subunit 1; Nuclear RNA polymerase E 1; Protein DEFECTIVE IN MERISTEM SILENCING 5; Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1; RNA polymerase IV subunit 1; POL IV 1; EC 2.7.7.6 from Arabidopsis thaliana (Mouse-ear cress) (see 16 papers)
Aligns to 1751:1827 / 1976 (3.9%), covers 98.7% of PF11523, 87.6 bits

EM514_ARATH / Q8L557 Protein EMBRYO DEFECTIVE 514; Protein DOMINO 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 85:158 / 202 (36.6%), covers 98.7% of PF11523, 86.4 bits

NRPD1_ARATH / Q9LQ02 DNA-directed RNA polymerase IV subunit 1; DNA-directed RNA polymerase D subunit 1; AtNRPD1a; Nuclear RNA polymerase D 1a; Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3; Protein SILENCING DEFECTIVE 4; Protein SILENCING MOVEMENT DEFICIENT 2; RNA polymerase IV subunit 1a; POL IV 1a; EC 2.7.7.6 from Arabidopsis thaliana (Mouse-ear cress) (see 21 papers)
Aligns to 1347:1419 / 1453 (5.0%), covers 100.0% of PF11523, 78.6 bits

Or search for genetic data about PF11523 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory